Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020083.1 Corchorus olitorius cultivar O-4 contig20116, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7620
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27


Found at i:1860 original size:15 final size:16

Alignment explanation


    Indices: 1840--1873  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1830 AATTAGGATG

                            
       1840 ACAAG-AACTAATTTA
          1 ACAAGAAACTAATTTA

                       *    
       1855 ACAAGAAACTATTTTA
          1 ACAAGAAACTAATTTA

               
       1871 ACA
          1 ACA

       1874 CGAATTAAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    5  0.29
  16   12  0.71

ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26


Consensus pattern (16 bp):   
ACAAGAAACTAATTTA

Done.