Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020084.1 Corchorus olitorius cultivar O-4 contig20117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5667
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:505 original size:21 final size:21

Alignment explanation


    Indices: 481--593  Score: 174
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        471 CTTAGGCAAT

                         *       
        481 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                *
        502 TCCAATGAGCTTGGAACCTTT
          1 TCCAATGAGCTTGGAACCTTC

                       *         
        523 TCCAATGAGCTAGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                       *         
        544 TCCAATGAGCTAGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        565 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        586 TCCAATGA
          1 TCCAATGA

        594 TCTCCTAGCA


Statistics
Matches: 86,  Mismatches: 5, Indels: 2
        0.92            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21   83  0.97

ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.