Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020088.1 Corchorus olitorius cultivar O-4 contig20121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23247

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1025--1091
4
16.2
4
90
6
107
74
0
25
0
0.82
6061--6116
6
9.2
6
83
12
53
0
10
16
73
1.10
6061--6120
28
2.0
28
87
12
84
0
10
16
73
1.09
13201--13298
48
2.0
48
100
0
196
44
2
16
36
1.59
13700--13805
31
3.4
30
81
2
131
18
22
26
32
1.97
15159--15472
30
10.7
30
84
6
329
31
18
19
30
1.96
15302--15346
22
2.0
22
100
0
90
35
17
17
28
1.93
15242--15398
82
1.9
82
92
0
260
32
19
18
29
1.96
15219--15426
112
1.9
112
91
0
344
31
19
19
29
1.96
15327--15543
30
6.9
32
79
5
144
33
16
15
34
1.90
15417--15523
32
3.3
32
74
7
99
36
15
13
34
1.87
15327--15539
65
3.4
62
88
4
270
33
16
15
33
1.91
18033--18242
111
1.9
111
97
0
402
23
21
22
31
1.98
18820--18899
40
2.0
40
90
0
124
32
20
7
40
1.80

Tables:   1

The End!