Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020089.1 Corchorus olitorius cultivar O-4 contig20122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22518

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6199--6265
22
3.2
20
77
12
71
41
10
5
41
1.64
6211--6332
22
5.5
22
71
13
90
38
12
8
40
1.73
6355--6424
22
3.2
22
79
0
77
44
17
5
32
1.72
6374--6652
44
6.4
43
69
14
151
37
15
10
36
1.82
6486--6759
107
2.6
106
78
12
251
37
17
7
37
1.79
6596--6760
65
2.6
64
76
11
167
38
18
7
36
1.78
6486--6760
129
2.1
128
81
10
303
37
17
7
37
1.79
6485--6779
22
13.8
21
72
9
152
37
17
7
36
1.79
6811--6886
22
3.5
21
76
1
71
34
17
7
40
1.78
6896--7012
61
1.9
60
86
5
164
39
21
5
34
1.75
6981--7036
23
2.5
23
79
2
69
32
21
7
39
1.80
6964--7104
22
6.5
22
74
8
76
35
16
9
39
1.80
7126--7282
22
7.2
22
71
8
106
33
17
10
38
1.85
7294--7399
44
2.4
44
82
6
117
42
18
7
31
1.78
7294--7415
22
5.6
22
74
8
106
42
17
8
31
1.78
7728--7765
10
3.9
10
83
16
53
52
0
15
31
1.43
17468--17518
25
2.0
25
92
0
84
47
5
7
39
1.57

Tables:   1

The End!