Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020094.1 Corchorus olitorius cultivar O-4 contig20127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4165

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
930--1071
73
1.9
73
80
11
164
38
11
19
30
1.88
1154--1201
23
2.0
25
92
8
82
25
29
4
41
1.74
1591--1640
13
3.6
14
82
10
50
40
10
16
34
1.81
1922--1985
5
12.6
5
79
15
69
64
18
1
15
1.38
1905--1986
21
3.7
23
75
14
66
64
17
2
15
1.39
1921--1985
11
5.8
11
78
10
78
64
18
1
15
1.37
1922--1985
16
4.2
16
75
18
73
64
18
1
15
1.38
2579--2759
50
3.6
50
82
5
222
32
19
14
32
1.93
2579--2759
100
1.8
100
86
0
263
32
19
14
32
1.93
3360--3636
50
5.7
50
85
7
392
30
29
12
27
1.93
3398--3575
92
1.9
92
95
0
320
32
28
12
26
1.93
3362--3620
142
1.8
142
94
0
464
30
28
13
27
1.94
3648--3828
50
3.6
50
92
3
294
35
11
25
27
1.90

Tables:   1

The End!