Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020099.1 Corchorus olitorius cultivar O-4 contig20132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17833

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--755
44
2.0
44
100
0
180
13
20
28
37
1.90
947--1019
38
2.0
35
84
7
92
42
9
19
28
1.82
1096--1130
2
17.5
2
100
0
70
51
0
0
48
1.00
2029--2091
30
2.1
30
90
0
99
57
6
11
25
1.57
2460--2512
27
2.0
27
100
0
106
45
15
20
18
1.85
3913--3957
20
2.2
20
96
0
81
33
35
4
26
1.77
3978--4021
18
2.4
18
100
0
88
61
13
20
4
1.50
4524--4553
14
2.1
14
100
0
60
60
20
0
20
1.37
5174--5297
21
5.8
21
73
11
101
40
12
8
38
1.73
6630--6661
12
2.7
12
100
0
64
53
31
15
0
1.43
7859--7883
2
12.5
2
100
0
50
52
0
0
48
1.00
8214--8778
22
26.2
22
68
15
148
36
15
9
39
1.79
8229--8778
44
12.8
43
70
13
269
36
15
9
38
1.79
8488--8591
46
2.3
44
86
6
138
40
12
9
37
1.76
8552--8778
66
3.6
61
72
10
163
37
15
7
40
1.76
8835--9129
22
13.2
22
66
17
72
34
14
10
41
1.79
8900--9129
66
3.5
65
76
8
207
34
13
10
42
1.78
8919--9068
44
3.4
44
72
10
119
35
12
9
43
1.74
9029--9088
21
2.6
24
82
15
72
38
10
6
45
1.64
12708--12742
18
1.9
18
94
0
61
65
0
0
34
0.93
13264--13425
80
2.1
78
96
2
297
33
23
12
30
1.92
17048--17207
78
2.1
78
93
0
275
51
0
13
35
1.45

Tables:   1

The End!