Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020101.1 Corchorus olitorius cultivar O-4 contig20134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9324
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32


Found at i:4989 original size:16 final size:17

Alignment explanation


    Indices: 4968--5002  Score: 63
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       4958 CCAACACAAG

                             
       4968 AGTACACAACCTC-TCT
          1 AGTACACAACCTCTTCT

                             
       4984 AGTACACAACCTCTTCT
          1 AGTACACAACCTCTTCT

              
       5001 AG
          1 AG

       5003 GTTGTGTACT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  16   13  0.72
  17    5  0.28

ACGTcount: A:0.31, C:0.34, G:0.09, T:0.26


Consensus pattern (17 bp):   
AGTACACAACCTCTTCT
Done.