Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020103.1 Corchorus olitorius cultivar O-4 contig20136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28874

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1928--1979
2
26.0
2
80
0
59
40
0
0
59
0.97
8246--8313
30
2.2
30
82
7
84
29
29
14
26
1.95
9168--9221
18
3.1
19
81
10
62
53
0
0
46
1.00
9865--10184
107
3.0
107
82
3
358
43
7
11
37
1.69
12951--12988
11
3.5
11
89
10
51
39
0
2
57
1.12
15264--15321
27
2.1
27
93
0
98
13
17
15
53
1.73
22588--22612
13
1.9
13
100
0
50
56
28
0
16
1.41
28206--28336
33
3.8
33
84
6
145
38
16
14
30
1.89

Tables:   1

The End!