Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020104.1 Corchorus olitorius cultivar O-4 contig20137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157564
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2011 original size:21 final size:21
Alignment explanation
Indices: 1985--2033 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
1975 GGGATCGAGA
*
1985 TGGGCGCTGA-GCCTTGTCGCC
1 TGGGCGCTGAGGCATT-TCGCC
2006 TGGGCGCTGAGGCATTTCGCC
1 TGGGCGCTGAGGCATTTCGCC
2027 TGGGCGC
1 TGGGCGC
2034 CCAGCGGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.06, C:0.31, G:0.41, T:0.22
Consensus pattern (21 bp):
TGGGCGCTGAGGCATTTCGCC
Found at i:12867 original size:20 final size:20
Alignment explanation
Indices: 12842--12879 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
12832 ATGTGGCCTA
12842 AAAATTCCACGTGGCCTTCG
1 AAAATTCCACGTGGCCTTCG
**
12862 AAAATTCTTCGTGGCCTT
1 AAAATTCCACGTGGCCTT
12880 TGTTAACGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (20 bp):
AAAATTCCACGTGGCCTTCG
Found at i:17508 original size:19 final size:20
Alignment explanation
Indices: 17460--17508 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
17450 TGGAATTTTC
17460 AATAA-TAATTATTCAATAA
1 AATAATTAATTATTCAATAA
* *
17479 AATAATT-ATTATTTAAT-T
1 AATAATTAATTATTCAATAA
17497 AATAATTAATTA
1 AATAATTAATTA
17509 ATTTCAGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 7 0.27
19 18 0.69
20 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATTAATTATTCAATAA
Found at i:18001 original size:2 final size:2
Alignment explanation
Indices: 17994--18020 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
17984 TTATATCAAA
17994 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18021 ACCAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26338 original size:2 final size:2
Alignment explanation
Indices: 26331--26364 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26321 ACTCTGCAGC
26331 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26365 CTAAAAGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29909 original size:2 final size:2
Alignment explanation
Indices: 29902--29940 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
29892 TCAATTTAAA
29902 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A- AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
29941 TTAAGTCCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:37097 original size:2 final size:2
Alignment explanation
Indices: 37092--37134 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
37082 TATATATATA
37092 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
37134 T
1 T
37135 TCTTGCAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:39338 original size:1 final size:1
Alignment explanation
Indices: 39332--39356 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
39322 TTTATTTATT
39332 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
39357 CCATCTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:46037 original size:6 final size:6
Alignment explanation
Indices: 46026--46056 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
46016 GATAGATTAA
46026 GCATTT GCATTT GCATTT GCATTT GCATTT G
1 GCATTT GCATTT GCATTT GCATTT GCATTT G
46057 GCTACTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.48
Consensus pattern (6 bp):
GCATTT
Found at i:46478 original size:41 final size:41
Alignment explanation
Indices: 46421--46498 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
46411 ATATGATTCA
46421 AGAAATGCTTTACAGTATCTAATAGGTCAAAATATATTTAC
1 AGAAATGCTTTACAGTATCTAATAGGTCAAAATATATTTAC
46462 AGAAATGCTTTACAGTATCTAATAGGTCAAAATATAT
1 AGAAATGCTTTACAGTATCTAATAGGTCAAAATATAT
46499 CTTGCATCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (41 bp):
AGAAATGCTTTACAGTATCTAATAGGTCAAAATATATTTAC
Found at i:48412 original size:1 final size:1
Alignment explanation
Indices: 48406--48431 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
48396 AGGTCTGGCC
48406 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
48432 GAGCGCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:50479 original size:27 final size:27
Alignment explanation
Indices: 50449--50509 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
50439 GGGCACTCTA
* * *
50449 GTCATTTGCACGTCCAATGGCATTTTG
1 GTCATTTGCACATCCAAGGGCATTTCG
* *
50476 GTCATTTGCACATTCAGGGGCATTTCG
1 GTCATTTGCACATCCAAGGGCATTTCG
50503 GTCATTT
1 GTCATTT
50510 TAAGTCCACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
GTCATTTGCACATCCAAGGGCATTTCG
Found at i:55140 original size:15 final size:15
Alignment explanation
Indices: 55117--55167 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
55107 AAGCAAATCC
55117 AAAAGAAGATTTTGG
1 AAAAGAAGATTTTGG
* *
55132 AAAATAAGATAATTCT-C
1 AAAAGAAGAT--TT-TGG
55149 AAAAGAAGATTTTGG
1 AAAAGAAGATTTTGG
55164 AAAA
1 AAAA
55168 TAAAGAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 1 0.04
15 15 0.54
17 11 0.39
18 1 0.04
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.25
Consensus pattern (15 bp):
AAAAGAAGATTTTGG
Found at i:55152 original size:32 final size:30
Alignment explanation
Indices: 55111--55196 Score: 138
Period size: 32 Copynumber: 2.8 Consensus size: 30
55101 TTTCTTAAGC
55111 AAATCCAAAAGAAGATTTTGGAAAAT-AAG
1 AAATCCAAAAGAAGATTTTGGAAAATAAAG
55140 ATAATTCTCAAAAGAAGATTTTGGAAAATAAAG
1 A-AA-TC-CAAAAGAAGATTTTGGAAAATAAAG
55173 AAATCCAAAAGAAGATTTTGGAAA
1 AAATCCAAAAGAAGATTTTGGAAA
55197 TTAATAAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
29 1 0.02
30 21 0.40
31 4 0.08
32 23 0.43
33 4 0.08
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (30 bp):
AAATCCAAAAGAAGATTTTGGAAAATAAAG
Found at i:55184 original size:30 final size:29
Alignment explanation
Indices: 55106--55196 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 29
55096 AACCTTTTCT
55106 TAAGCAAATCCAAAAGAAGATTTTGGAAAA
1 TAAG-AAATCCAAAAGAAGATTTTGGAAAA
55136 TAAGATAATTCTCAAAAGAAGATTTTGGAAAA
1 TAAGA-AA-TC-CAAAAGAAGATTTTGGAAAA
55168 TAAAGAAATCCAAAAGAAGATTTTGGAAA
1 T-AAGAAATCCAAAAGAAGATTTTGGAAA
55197 TTAATAAAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
29 1 0.02
30 25 0.44
31 4 0.07
32 23 0.40
33 4 0.07
ACGTcount: A:0.53, C:0.08, G:0.16, T:0.23
Consensus pattern (29 bp):
TAAGAAATCCAAAAGAAGATTTTGGAAAA
Found at i:57764 original size:15 final size:16
Alignment explanation
Indices: 57743--57783 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
57733 GAGAGGTTGA
57743 AAGAAAACAATTA-A-
1 AAGAAAACAATTATAT
57757 ACAGAAAACAATTATAT
1 A-AGAAAACAATTATAT
57774 AAGAAAACAA
1 AAGAAAACAA
57784 AGCAGAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.04
15 12 0.50
16 10 0.42
17 1 0.04
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (16 bp):
AAGAAAACAATTATAT
Found at i:59199 original size:29 final size:31
Alignment explanation
Indices: 59162--59221 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 31
59152 AATTCTTTCC
* *
59162 TCTTGAAATAATTCTTC-AAT-GTCTTCAAA
1 TCTTCAAATAAATCTTCAAATGGTCTTCAAA
59191 TCTTCAAATAAATCTTCAAATGGTCTTCAAA
1 TCTTCAAATAAATCTTCAAATGGTCTTCAAA
59222 CACGAACTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 15 0.56
30 3 0.11
31 9 0.33
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (31 bp):
TCTTCAAATAAATCTTCAAATGGTCTTCAAA
Found at i:62896 original size:30 final size:29
Alignment explanation
Indices: 62860--62918 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 29
62850 TTTAGGTAAT
62860 TCCAAAAGAAGATTTTGGAAAATAAATAAA
1 TCCAAAAGAAGATTTTGG-AAATAAATAAA
*
62890 TCCAAAAGAAGATTTTGGAAATTAATAAA
1 TCCAAAAGAAGATTTTGGAAATAAATAAA
62919 ATTGGTCAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (29 bp):
TCCAAAAGAAGATTTTGGAAATAAATAAA
Found at i:67644 original size:27 final size:27
Alignment explanation
Indices: 67606--67666 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
67596 AGATTTTAGG
*
67606 CCCAGGAATCAGGGGCAGCAATATTAT
1 CCCAGGAATCAGGGGCAACAATATTAT
67633 CCCAGGAATCAGGGGCAACAATATTAT
1 CCCAGGAATCAGGGGCAACAATATTAT
*
67660 CCAAGGA
1 CCCAGGA
67667 GCTACGGGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
CCCAGGAATCAGGGGCAACAATATTAT
Found at i:72812 original size:11 final size:12
Alignment explanation
Indices: 72773--72814 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
72763 ATTTAAGTAC
72773 ATTTTTCTATAATT
1 ATTTTT-TAT-ATT
72787 GATTTTTTATATT
1 -ATTTTTTATATT
72800 ATTTTTTAT-TT
1 ATTTTTTATATT
72811 ATTT
1 ATTT
72815 ATTTTATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 6 0.22
12 9 0.33
13 3 0.11
14 3 0.11
15 6 0.22
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
ATTTTTTATATT
Found at i:72853 original size:12 final size:13
Alignment explanation
Indices: 72814--72856 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
72804 TTTATTTATT
72814 TATTTTATAAATA
1 TATTTTATAAATA
*
72827 -ATTATTATTAATA
1 TATT-TTATAAATA
72840 TATTTTA-AAATA
1 TATTTTATAAATA
72852 TATTT
1 TATTT
72857 AATATTGGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 12 0.46
13 11 0.42
14 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTTTATAAATA
Found at i:74124 original size:22 final size:22
Alignment explanation
Indices: 74096--74137 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74086 GAAAAATTCG
*
74096 TAACCCGAATGACCCGAGAAGT
1 TAACCCGAATGACCCAAGAAGT
*
74118 TAACCCGGATGACCCAAGAA
1 TAACCCGAATGACCCAAGAA
74138 TATTATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.29, G:0.21, T:0.12
Consensus pattern (22 bp):
TAACCCGAATGACCCAAGAAGT
Found at i:75312 original size:6 final size:6
Alignment explanation
Indices: 75301--75325 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75291 TTTAATATGG
75301 TATAGA TATAGA TATAGA TATAGA T
1 TATAGA TATAGA TATAGA TATAGA T
75326 GTTACCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
TATAGA
Found at i:75671 original size:22 final size:23
Alignment explanation
Indices: 75625--75684 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
75615 TGAATATTTT
**
75625 TATG-AAATTTTGATAATTATCC
1 TATGTAAATTTTGATAACCATCC
75647 TAT-TAAATTTTGATAACCA-CGC
1 TATGTAAATTTTGATAACCATC-C
*
75669 TATGT-AATATTGATAA
1 TATGTAAATTTTGATAA
75685 TTGCCTATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (23 bp):
TATGTAAATTTTGATAACCATCC
Found at i:77138 original size:33 final size:34
Alignment explanation
Indices: 77071--77138 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 34
77061 TCTAAATTTC
*
77071 TATTATTTTAATAATTGATAATTAAAATATTATT
1 TATTATTTTAATAATTGACAATTAAAATATTATT
77105 TATTA-TTTAATAA-TGACAATTTAGAAATA-TATT
1 TATTATTTTAATAATTGACAA-TTA-AAATATTATT
77138 T
1 T
77139 GAAATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 5 0.16
33 16 0.52
34 10 0.32
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (34 bp):
TATTATTTTAATAATTGACAATTAAAATATTATT
Found at i:80958 original size:51 final size:51
Alignment explanation
Indices: 80882--80980 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
80872 CTTCACTAAC
* *
80882 GGATTCCGTTAAATCCCACCAGATTTGATGACGTGGCATATTTTTGTTGAT
1 GGATTCCATTAAATCCCACCAGATTTGATGACGTGGCAAATTTTTGTTGAT
* *
80933 GGATTCCATTAAATCCGACCAGATTTGATGATGTGGCAAATTTTTGTT
1 GGATTCCATTAAATCCCACCAGATTTGATGACGTGGCAAATTTTTGTT
80981 AACGTGGCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (51 bp):
GGATTCCATTAAATCCCACCAGATTTGATGACGTGGCAAATTTTTGTTGAT
Found at i:83467 original size:21 final size:19
Alignment explanation
Indices: 83422--83479 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
83412 CTGTTTAGCA
83422 ACTGTACAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
* *
83441 ACTGTACAGATTAGATTAGGT
1 ACTGTACAGATGAGATTA--C
83462 ACTGTACAGATGAGATTA
1 ACTGTACAGATGAGATTA
83480 TTAGAGCAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:86198 original size:79 final size:78
Alignment explanation
Indices: 86063--86214 Score: 277
Period size: 79 Copynumber: 1.9 Consensus size: 78
86053 TGAGGTTTTG
86063 GGTTAACTCTCACGGAATGTGAGTTTAATTTGTAATTTGTTTGTTTGTTTATTTGGTTTGTAAGT
1 GGTTAACTCTCACGGAATGTGAGTTTAATTTGTAATTTGTTTGTTTGTTTATTTGGTTTGTAAGT
*
86128 AGGTATAGGTCTT
66 AGATATAGGTCTT
*
86141 GGTTCAACTCTCACGGACTGTGAGTTTAATTTGTAATTTGTTTGTTTGTTTATTTGGTTTGTAAG
1 GGTT-AACTCTCACGGAATGTGAGTTTAATTTGTAATTTGTTTGTTTGTTTATTTGGTTTGTAAG
86206 TAGATATAG
65 TAGATATAG
86215 TTTCTAGTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 4 0.06
79 67 0.94
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (78 bp):
GGTTAACTCTCACGGAATGTGAGTTTAATTTGTAATTTGTTTGTTTGTTTATTTGGTTTGTAAGT
AGATATAGGTCTT
Found at i:87988 original size:33 final size:33
Alignment explanation
Indices: 87941--88059 Score: 148
Period size: 33 Copynumber: 3.6 Consensus size: 33
87931 AAATGGTCGG
*
87941 TGCCGCCCTTGGTGGGCGGCGTGGCCATGGGGA
1 TGCCGCCCTCGGTGGGCGGCGTGGCCATGGGGA
* **
87974 TGCCGCCCCCGGTGGGCGGCGTGGCCATGGTCA
1 TGCCGCCCTCGGTGGGCGGCGTGGCCATGGGGA
** * **
88007 TGCCGCCCAAGGAGGGCGGCGTCACCATGGGGA
1 TGCCGCCCTCGGTGGGCGGCGTGGCCATGGGGA
*
88040 TGCCGCCCTCAGTGGGCGGC
1 TGCCGCCCTCGGTGGGCGGC
88060 ATGATCTTGG
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.09, C:0.33, G:0.44, T:0.14
Consensus pattern (33 bp):
TGCCGCCCTCGGTGGGCGGCGTGGCCATGGGGA
Found at i:88075 original size:66 final size:66
Alignment explanation
Indices: 87954--88080 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 66
87944 CGCCCTTGGT
** * * * *
87954 GGGCGGCGTGGCCATGGGGATGCCGCCCCCGGTGGGCGGCGTGGCCATGGTCATGCCGCCCAAGG
1 GGGCGGCGTCACCATGGGGATGCCGCCCCCAGTGGGCGGCATGACCATGGCCATGCCGCCCAAGG
88019 A
66 A
* * *
88020 GGGCGGCGTCACCATGGGGATGCCGCCCTCAGTGGGCGGCATGATCTTGGCCATGCCGCCC
1 GGGCGGCGTCACCATGGGGATGCCGCCCCCAGTGGGCGGCATGACCATGGCCATGCCGCCC
88081 TCCTAGGGCG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.11, C:0.33, G:0.42, T:0.14
Consensus pattern (66 bp):
GGGCGGCGTCACCATGGGGATGCCGCCCCCAGTGGGCGGCATGACCATGGCCATGCCGCCCAAGG
A
Found at i:91603 original size:20 final size:21
Alignment explanation
Indices: 91580--91618 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
91570 ACCCCAATAT
91580 ACATAAAAATCCA-AAAAAAG
1 ACATAAAAATCCATAAAAAAG
*
91600 ACATAAACATCCATAAAAA
1 ACATAAAAATCCATAAAAA
91619 TCCCAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.67, C:0.18, G:0.03, T:0.13
Consensus pattern (21 bp):
ACATAAAAATCCATAAAAAAG
Found at i:93745 original size:27 final size:27
Alignment explanation
Indices: 93715--93782 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
93705 AGCACCAGCG
93715 GCAGCCTC-CCTCTCCCTATACATCCGA
1 GCAGCCTCACC-CTCCCTATACATCCGA
*
93742 GCAGCCTCAGCCTCCCTATACATCCGA
1 GCAGCCTCACCCTCCCTATACATCCGA
*
93769 GCAGCCTCAGCCTC
1 GCAGCCTCACCCTC
93783 TTTATCCCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.47, G:0.15, T:0.19
Consensus pattern (27 bp):
GCAGCCTCACCCTCCCTATACATCCGA
Found at i:93791 original size:33 final size:27
Alignment explanation
Indices: 93726--93782 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
93716 CAGCCTCCCT
93726 CTCCCTATACATCCGAGCAGCCTCAGC
1 CTCCCTATACATCCGAGCAGCCTCAGC
93753 CTCCCTATACATCCGAGCAGCCTCAGC
1 CTCCCTATACATCCGAGCAGCCTCAGC
93780 CTC
1 CTC
93783 TTTATCCCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.46, G:0.14, T:0.19
Consensus pattern (27 bp):
CTCCCTATACATCCGAGCAGCCTCAGC
Found at i:94286 original size:33 final size:33
Alignment explanation
Indices: 94207--94279 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
94197 TTCCGGTGGT
* * *
94207 GGCGCCTTCGCCATGTCGACGGCGCCCCAATAG
1 GGCGCCATCGCCATGACGACGGCGCCCCAAGAG
* * *
94240 GGCGCCATCGCCATGACGTCGGCGCCCCCAGGG
1 GGCGCCATCGCCATGACGACGGCGCCCCAAGAG
94273 GGCGCCA
1 GGCGCCA
94280 CTGCCATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.14, C:0.41, G:0.34, T:0.11
Consensus pattern (33 bp):
GGCGCCATCGCCATGACGACGGCGCCCCAAGAG
Found at i:94818 original size:37 final size:37
Alignment explanation
Indices: 94683--94810 Score: 148
Period size: 37 Copynumber: 3.5 Consensus size: 37
94673 GTAGTGTTTT
* * *
94683 GTAAGGAGAGCTCTGTGGTAAACAGGGTGCTACCACA
1 GTAAGGAGAGCTCTGCGGTAAAGAGGGTGCTACCGCA
* * * * *
94720 GTATGGAGAGCTCTGCGGTGAAGAGGGTGCAACTGCT
1 GTAAGGAGAGCTCTGCGGTAAAGAGGGTGCTACCGCA
* * *
94757 GTAAGGAGAGTTTTGCGGTAAAGAGGGTGCTACCGCG
1 GTAAGGAGAGCTCTGCGGTAAAGAGGGTGCTACCGCA
*
94794 GTAATGAGAGCTCTGCG
1 GTAAGGAGAGCTCTGCG
94811 ATGAAGAGTG
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.25, C:0.16, G:0.38, T:0.21
Consensus pattern (37 bp):
GTAAGGAGAGCTCTGCGGTAAAGAGGGTGCTACCGCA
Found at i:99566 original size:26 final size:27
Alignment explanation
Indices: 99532--99602 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 27
99522 GGTCACCAAG
*
99532 GGGCATTTTGGTCATTTTTACACT-AA
1 GGGCATTTTGGTCATTTTCACACTCAA
* * * *
99558 GGGCATTTTGGTCATTTGCATATTCAT
1 GGGCATTTTGGTCATTTTCACACTCAA
99585 GGGCATTTTGGTCATTTT
1 GGGCATTTTGGTCATTTT
99603 AAGTCCACTT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.18, C:0.14, G:0.23, T:0.45
Consensus pattern (27 bp):
GGGCATTTTGGTCATTTTCACACTCAA
Found at i:101892 original size:30 final size:31
Alignment explanation
Indices: 101840--101909 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
101830 TTTAAATTGC
**
101840 TGCAATTTGGGGGCTGATTGTGTTTGACTGT
1 TGCAATTTGGGCCCTGATTGTGTTTGACTGT
*
101871 TGCAATTTGGGCCCT-ATTGTGTTTGATTGT
1 TGCAATTTGGGCCCTGATTGTGTTTGACTGT
101901 TGCAATTTG
1 TGCAATTTG
101910 AGACTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 23 0.64
31 13 0.36
ACGTcount: A:0.14, C:0.11, G:0.30, T:0.44
Consensus pattern (31 bp):
TGCAATTTGGGCCCTGATTGTGTTTGACTGT
Found at i:102681 original size:16 final size:17
Alignment explanation
Indices: 102650--102683 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
102640 CTTGGAAAAG
102650 GGATTGATGAATTAACTT
1 GGATTGAT-AATTAACTT
102668 GGATTGAT-ATTAACTT
1 GGATTGATAATTAACTT
102684 AAAAATCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (17 bp):
GGATTGATAATTAACTT
Found at i:115432 original size:10 final size:10
Alignment explanation
Indices: 115417--115462 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
115407 TCAACCTCTC
*
115417 TTCTTTTCTT
1 TTCTTTTCCT
115427 TTCTTTTCCT
1 TTCTTTTCCT
*
115437 TTCCTTTCCT
1 TTCTTTTCCT
*
115447 TTC-TTTCCC
1 TTCTTTTCCT
115456 TTCTTTT
1 TTCTTTT
115463 TCTTCTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TTCTTTTCCT
Found at i:117104 original size:6 final size:6
Alignment explanation
Indices: 117095--117199 Score: 149
Period size: 6 Copynumber: 17.5 Consensus size: 6
117085 ACGAAGACGC
* * * * *
117095 TGATGA TGATAA TGATAA TGAT-A GTGATAA TGATAA TGATAA TGATGA
1 TGATGA TGATGA TGATGA TGATGA -TGATGA TGATGA TGATGA TGATGA
117143 TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA
1 TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA TGATGA
117191 TGATGA TGA
1 TGATGA TGA
117200 CGGTGGTGGT
Statistics
Matches: 95, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
5 1 0.01
6 93 0.98
7 1 0.01
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (6 bp):
TGATGA
Found at i:117212 original size:15 final size:15
Alignment explanation
Indices: 117146--117230 Score: 62
Period size: 15 Copynumber: 5.7 Consensus size: 15
117136 ATGATGATGA
* * *
117146 TGATGATGATGATGA
1 TGATGATGACGGTGG
* * *
117161 TGATGATGATGATGA
1 TGATGATGACGGTGG
* * *
117176 TGATGATGATGATGA
1 TGATGATGACGGTGG
117191 TGATGATGACGGTGG
1 TGATGATGACGGTGG
* **
117206 TGGTGATGGTGGTGG
1 TGATGATGACGGTGG
117221 TGATGATGAC
1 TGATGATGAC
117231 CATGACAGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 61 1.00
ACGTcount: A:0.26, C:0.02, G:0.40, T:0.32
Consensus pattern (15 bp):
TGATGATGACGGTGG
Found at i:117216 original size:12 final size:12
Alignment explanation
Indices: 117201--117225 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
117191 TGATGATGAC
117201 GGTGGTGGTGAT
1 GGTGGTGGTGAT
117213 GGTGGTGGTGAT
1 GGTGGTGGTGAT
117225 G
1 G
117226 ATGACCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.60, T:0.32
Consensus pattern (12 bp):
GGTGGTGGTGAT
Found at i:122690 original size:438 final size:435
Alignment explanation
Indices: 121784--122818 Score: 1200
Period size: 438 Copynumber: 2.3 Consensus size: 435
121774 AGATGATATT
* * * * * *
121784 ACAAAATTTCAAAAGTATTTTTTAGAATTTAAATATGAAAATTAGCTTTTGAGTCTTTTATGAAA
1 ACAAAATTTCAAAAGCATTTTTTAGAATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATG--A
* * *
121849 AAGTTGTAGATCATAAAATTACTTTTTAATAGACACTTGAATTACCTTAATTGTTGGACAAATAG
64 AAGTTGTAGATCATGAAATTAC-TTTTAATAGACACTTGAATCACCTTAA---TCGGACAAATAG
* * * *
121914 AACAAAGAAAATAAAAAATGAAGCGTTAAATGGAGTAAGATAGAATTTGTAAAGAACTAAGTAGC
125 AACAAAGAATA-AAAAAATAAATCGTTAAACGGAGTAAGATAGAATTTGTAAAGAACTAAGTAG-
* * * * *
121979 ATAAAATATATAAAATAGAAAAGTATGAGGGTCATTTGATAACTAATTCAAATAAGAAATTATTT
188 -------ATATAAAATAGAAAAATATGAGGGTCATTTAATAAATAATCCAAATAAGAAAATATTT
* *
122044 CTTAATGAATATCTTGAAACATAAAACTTCCCTTTTGAACCCTTCATGAAACTAATAGCTCAAAT
246 CTTAATGAAGATCTTGAAACATAAAACTTCCCTTTTGAACCCTTCATGAAACTAATAGATCAAAT
* * * * * * *
122109 TAACTTTCGGGTTCTTCATGAAAGTCGTAGATCATACAGTAACCTTTTAACCGACACTTGAATTA
311 TAACTTTCGGGTCCTTCAAGAAAATCGTAAATCATACAATAACCTTTTAACCGACACTTCAATAA
* * * *
122174 CTTTAATCGGACATGTGGATCGAAAATTATATGGTATTAAATAGACCAACAATCGAAACA
376 CTTCAATCGGACATGTGGATCAAAAATTATATGATATTAAATAGACCAACAATCAAAACA
* * * *
122234 ACCAAATTT-AGGAAGCATTTTTTTGAATTAAAACATAAAAATTTGCTTTTGAGTCCTTCATGAA
1 ACAAAATTTCA-AAAGCATTTTTTAGAATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATGAA
* *
122298 AGTTGTAGATCATGAAATTATCTTTTAATAGACACATGAATCAACTTAATCGGACAAATAGAACA
65 AGTTGTAGATCATGAAATTA-CTTTTAATAGACACTTGAATCACCTTAATCGGACAAATAGAACA
*
122363 AAGAATAAAAAAATAAATC-TTAAACGTTAGATGAAGATAGAATTTGTAAAGAACTAAGTAG-TA
129 AAGAATAAAAAAATAAATCGTTAAACG-GAG-T-AAGATAGAATTTGTAAAGAACTAAGTAGATA
* * * * * *
122426 TAAAGTTGAAAAATATGAGGGTTATTTAATAAATAATCCAAATAAGAAAATGTTTGTTAATGGAG
191 TAAAATAGAAAAATATGAGGGTCATTTAATAAATAATCCAAATAAGAAAATATTTCTTAATGAAG
* ** * *
122491 ATCTTGAAGCATAAAAAC-TCCCTTTTGAACCCTTCATGAAACTCGTAGATTAAATTTAGCTTTC
256 ATCTTGAAACAT-AAAACTTCCCTTTTGAACCCTTCATGAAACTAATAGATCAAA-TTAACTTTC
** *
122555 GGGTCCTTCAAGAAAATCGTAAATCATGTAATAACCTTTTAACCGACACTTCAATAACTTCGATC
319 GGGTCCTTCAAGAAAATCGTAAATCATACAATAACCTTTTAACCGACACTTCAATAACTTCAATC
* * ** *
122620 GGATATGTGGA-CAAAAAATTATATGATATTAAATTGACCGGCAATCAAAACC
384 GGACATGTGGATC-AAAAATTATATGATATTAAATAGACCAACAATCAAAACA
* * * * *
122672 ATAAAATTTCAAAAGCATTTTTTAGAATCAAAACATTAAAATTGGCTTTTGAGTTCTTCATGAAA
1 ACAAAATTTCAAAAGCATTTTTTAGAATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATGAAA
* * *
122737 ATTATAGATCATGAAATTACCTTTTAAAAGACACTTGAATCACCTTAATCGGACAAATAGGAA-A
66 GTTGTAGATCATGAAATTA-CTTTTAATAGACACTTGAATCACCTTAATCGGACAAATA-GAACA
* *
122801 AAAAATACAAAAATAAAT
129 AAGAATAAAAAAATAAAT
122819 GCGAACGCGT
Statistics
Matches: 502, Mismatches: 73, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
437 99 0.20
438 234 0.47
439 4 0.01
443 6 0.01
444 12 0.02
445 22 0.04
446 28 0.06
448 45 0.09
449 2 0.00
450 50 0.10
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.31
Consensus pattern (435 bp):
ACAAAATTTCAAAAGCATTTTTTAGAATTAAAACATAAAAATTAGCTTTTGAGTCCTTCATGAAA
GTTGTAGATCATGAAATTACTTTTAATAGACACTTGAATCACCTTAATCGGACAAATAGAACAAA
GAATAAAAAAATAAATCGTTAAACGGAGTAAGATAGAATTTGTAAAGAACTAAGTAGATATAAAA
TAGAAAAATATGAGGGTCATTTAATAAATAATCCAAATAAGAAAATATTTCTTAATGAAGATCTT
GAAACATAAAACTTCCCTTTTGAACCCTTCATGAAACTAATAGATCAAATTAACTTTCGGGTCCT
TCAAGAAAATCGTAAATCATACAATAACCTTTTAACCGACACTTCAATAACTTCAATCGGACATG
TGGATCAAAAATTATATGATATTAAATAGACCAACAATCAAAACA
Found at i:123609 original size:59 final size:59
Alignment explanation
Indices: 123517--123632 Score: 214
Period size: 59 Copynumber: 2.0 Consensus size: 59
123507 GCTTATAAGC
*
123517 AACTTATTTTAGTTTTTCTACCAACGGGTCAACAATTAAAAGCTTACTTCACCGTACGT
1 AACTTATTTTAGCTTTTCTACCAACGGGTCAACAATTAAAAGCTTACTTCACCGTACGT
*
123576 AACTTATTTTAGCTTTTCTACCAACGGGTCAACAATTGAAAGCTTACTTCACCGTAC
1 AACTTATTTTAGCTTTTCTACCAACGGGTCAACAATTAAAAGCTTACTTCACCGTAC
123633 ATACTGACTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (59 bp):
AACTTATTTTAGCTTTTCTACCAACGGGTCAACAATTAAAAGCTTACTTCACCGTACGT
Found at i:124858 original size:80 final size:80
Alignment explanation
Indices: 124699--124854 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 80
124689 AAAGTGGTTT
*
124699 CGGATCTTAGACGACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTAGGAAGAGAAATAAAAA
1 CGGATCTTAGACAACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTAGGAAGAGAAATAAAAA
124764 CGAGGGGGAGTTGCA
66 CGAGGGGGAGTTGCA
** * * * *
124779 CGGATCTTAGACAACTTTTGAAGATGGGTTGGTTGGAAAACCTATTTTGGGAAG-GAAAATGAAA
1 CGGATCTTAGACAACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTAGGAAGAG-AAATAAAA
124843 ACGA-GGGGAGTT
65 ACGAGGGGGAGTT
124855 TGCATAACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
79 9 0.13
80 59 0.87
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (80 bp):
CGGATCTTAGACAACTTTTGAAGATAAGTCGGCTGGAAAACCTATTTTAGGAAGAGAAATAAAAA
CGAGGGGGAGTTGCA
Found at i:136739 original size:2 final size:2
Alignment explanation
Indices: 136734--136773 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
136724 TCAGATTATC
136734 AT AT AT AT AT AT AT AT AT AT AT AT -T AGT AT -T AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT A
136774 ATTCGGTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 2 0.06
2 31 0.89
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:138627 original size:3 final size:3
Alignment explanation
Indices: 138619--138649 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
138609 ACCGATCAAC
138619 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
138650 ATATACTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:144473 original size:16 final size:16
Alignment explanation
Indices: 144452--144487 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
144442 TTGAATCCTA
144452 CATGAAAGTTATAAAT
1 CATGAAAGTTATAAAT
* *
144468 CATGAAAGTTGTAGAT
1 CATGAAAGTTATAAAT
144484 CATG
1 CATG
144488 CAATAATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (16 bp):
CATGAAAGTTATAAAT
Found at i:150538 original size:47 final size:49
Alignment explanation
Indices: 150470--150563 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 49
150460 ACAATCAGAC
*
150470 TAATATTTGTGTAGGTGGGCTACAAGGTGGGGAAATTTTTGTTGTATAA
1 TAATATTTGTGTAGGTGGGCTACAAGGTGGGGAAATTTTTATTGTATAA
**
150519 TAAT-TTTG-GTAGGTGGGCTACAAGGTGTTGAAATTTTTATTGTAT
1 TAATATTTGTGTAGGTGGGCTACAAGGTGGGGAAATTTTTATTGTAT
150564 TCTAAGTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 34 0.81
48 4 0.10
49 4 0.10
ACGTcount: A:0.26, C:0.04, G:0.29, T:0.41
Consensus pattern (49 bp):
TAATATTTGTGTAGGTGGGCTACAAGGTGGGGAAATTTTTATTGTATAA
Done.