Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020106.1 Corchorus olitorius cultivar O-4 contig20139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44574

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5036--5113
3
25.7
3
94
5
115
0
29
0
70
0.87
5087--5130
4
12.2
4
86
13
53
0
18
0
81
0.68
5084--5130
7
6.7
7
83
9
60
0
19
0
80
0.70
5039--5130
18
5.5
16
82
12
89
0
26
0
73
0.83
6535--6580
22
2.1
22
91
0
74
15
39
17
28
1.90
13857--13909
28
1.9
28
84
3
72
49
9
5
35
1.59
15262--15332
14
5.1
14
74
5
63
59
0
1
39
1.06
27525--27565
17
2.4
17
83
0
55
41
24
0
34
1.55
28175--28244
22
3.2
22
76
13
81
57
0
2
40
1.14
30865--30889
12
2.1
12
100
0
50
16
8
36
40
1.77
32169--32236
29
2.5
28
79
9
77
26
5
8
58
1.51
32627--32665
14
2.7
14
88
4
51
0
28
0
71
0.86
32627--32666
19
2.2
18
90
4
62
0
27
0
72
0.85
33406--33460
27
2.0
28
82
10
69
16
29
0
54
1.42
33633--33705
33
2.2
33
87
2
103
20
27
4
47
1.68
34898--34925
14
2.0
14
100
0
56
42
14
7
35
1.73
39378--39405
14
2.0
14
100
0
56
78
0
14
7
0.95
41993--42029
12
3.1
12
92
0
65
45
24
2
27
1.66

Tables:   1

The End!