Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020107.1 Corchorus olitorius cultivar O-4 contig20140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13168

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--101
17
1.9
18
94
5
61
17
5
17
58
1.57
72--110
18
2.2
17
86
4
51
15
7
15
61
1.55
99--152
17
3.1
18
81
5
65
11
16
14
57
1.65
101--154
18
3.1
17
79
15
56
12
14
16
55
1.69
989--1030
21
2.0
21
86
9
59
47
35
0
16
1.47
1906--1947
21
2.0
21
86
9
59
47
35
0
16
1.47
2281--2312
2
16.0
2
100
0
64
50
0
0
50
1.00
2334--2376
3
14.0
3
95
4
77
34
0
0
65
0.93
2372--2525
68
2.2
69
81
2
184
38
13
14
33
1.86
3867--4647
205
3.7
213
81
4
880
29
16
13
40
1.86
4846--4899
11
5.0
11
81
4
65
0
5
16
77
0.94
4864--4899
17
2.1
17
90
10
56
0
2
16
80
0.83
8530--8877
125
2.8
124
80
3
349
37
16
13
32
1.88
12714--12794
42
1.9
42
94
0
144
46
14
8
29
1.75
12860--12974
56
2.0
57
89
1
178
41
1
21
34
1.64

Tables:   1

The End!