Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020108.1 Corchorus olitorius cultivar O-4 contig20141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106890

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4517--4592
21
3.5
22
82
8
93
42
7
17
32
1.78
4566--4621
29
1.9
29
85
0
76
41
7
10
41
1.67
4613--4668
22
2.5
22
85
5
78
42
8
8
39
1.68
4759--4793
2
17.5
2
100
0
70
51
0
0
48
1.00
5029--5100
31
2.3
31
75
17
78
27
4
6
61
1.41
5354--5400
13
3.8
12
78
13
51
40
0
4
55
1.19
6484--6626
75
1.9
75
89
2
225
50
6
7
34
1.58
6641--6665
11
2.3
11
100
0
50
72
0
0
28
0.86
8693--8724
11
2.9
11
90
0
55
81
15
3
0
0.82
23683--23721
15
2.6
15
87
0
51
7
7
33
51
1.59
25960--26014
15
3.7
15
85
0
74
36
29
9
25
1.87
26183--26228
18
2.6
18
92
0
74
17
41
8
32
1.80
28022--28048
7
3.9
7
100
0
54
88
0
0
11
0.50
31014--31057
22
2.0
22
87
12
65
31
4
40
22
1.74
32358--32563
52
4.0
52
91
0
313
27
15
20
36
1.93
32618--32699
37
2.2
37
88
0
119
25
17
23
34
1.96
38634--38757
63
2.0
63
91
0
203
37
12
14
36
1.83
40571--40620
25
2.0
26
88
4
75
28
10
14
48
1.75
41595--41622
13
2.2
13
100
0
56
35
7
14
42
1.73
42234--42259
13
2.0
13
100
0
52
15
7
15
61
1.55
45419--45460
6
7.2
6
94
5
77
16
0
0
83
0.65
47449--47479
15
2.1
15
93
0
53
83
0
0
16
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56181--56213
2
16.5
2
100
0
66
48
0
0
51
1.00
56541--56570
13
2.2
14
94
5
53
6
10
0
83
0.81
56837--56947
56
2.0
56
91
3
179
31
24
8
36
1.85
57276--57324
25
2.0
25
100
0
98
34
20
32
12
1.90
58132--58173
21
2.0
21
86
9
59
16
0
35
47
1.47
58887--58984
51
1.9
51
100
0
196
25
24
18
31
1.97
75606--75652
17
2.8
17
75
9
51
21
4
17
57
1.56
79065--79109
10
4.6
10
86
5
65
80
0
15
4
0.87
79062--79109
19
2.5
19
93
3
78
79
0
16
4
0.89
79140--79193
20
2.6
21
75
16
58
27
12
3
55
1.54
80769--80815
20
2.4
19
89
3
67
78
0
21
0
0.75
82752--82813
22
2.8
22
92
0
106
17
22
45
14
1.85
83862--84023
53
3.1
53
82
4
202
30
21
12
34
1.91
83989--84266
35
7.7
36
81
7
282
29
15
16
38
1.90
83989--84197
107
1.9
105
85
6
285
31
14
15
38
1.88
86669--86710
10
3.7
11
79
17
50
76
0
14
9
1.02
87094--87186
12
8.0
11
76
17
73
83
6
0
9
0.79
87094--87186
29
3.2
29
82
10
102
83
6
0
9
0.79
87094--87186
28
3.2
28
83
10
100
83
6
0
9
0.79
87096--87173
34
2.3
34
82
8
95
85
5
0
8
0.72
87095--87173
1
79.0
1
71
0
59
86
5
0
8
0.71
87095--87186
13
7.4
12
78
16
64
84
5
0
9
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88272--88877
169
3.7
167
84
6
820
28
19
17
33
1.95
88273--88877
326
1.9
326
89
1
944
28
20
17
33
1.95
89132--89290
30
5.3
30
93
1
266
20
12
18
49
1.79
88908--89172
38
7.0
38
91
0
406
16
14
21
48
1.81
89132--89286
59
2.6
60
91
2
258
20
12
18
48
1.80
89256--89549
38
8.2
38
68
17
148
23
14
14
46
1.82
89228--89367
72
2.0
68
86
8
192
22
15
15
47
1.82
89229--89431
104
2.0
102
84
3
264
24
14
15
45
1.84
89520--89617
40
2.4
38
75
11
97
24
16
16
42
1.87
90044--90092
17
2.9
17
82
11
66
24
6
16
53
1.66
105927--105997
33
2.2
33
100
0
142
28
5
5
60
1.42
105927--106010
33
2.5
33
92
3
116
29
4
4
60
1.38

Tables:   1

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