Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020109.1 Corchorus olitorius cultivar O-4 contig20142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21199

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1458--1898
223
2.0
218
90
4
697
42
18
14
24
1.87
2376--2718
173
2.0
172
94
2
613
27
12
11
48
1.75
5129--5166
13
2.9
14
80
11
53
60
7
0
31
1.25
5129--5168
14
2.9
15
79
20
52
60
10
0
30
1.30
8633--8726
45
2.2
43
90
7
147
38
22
5
34
1.77
10065--10114
25
2.0
25
84
0
64
46
16
6
32
1.71
12264--12330
26
2.6
26
81
6
82
44
5
19
29
1.74
13855--13896
16
2.6
16
88
0
66
35
42
14
7
1.73
14119--14151
2
16.5
2
100
0
66
51
0
0
48
1.00
14775--14897
16
7.8
16
84
5
160
39
39
13
6
1.71
16122--16170
21
2.3
21
86
6
64
48
12
4
34
1.59

Tables:   1

The End!