Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002011.1 Corchorus olitorius cultivar O-4 contig02011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1755
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30


Found at i:617 original size:43 final size:45

Alignment explanation


    Indices: 531--619  Score: 121
    Period size: 43  Copynumber: 2.0  Consensus size: 45

        521 ATAAAATGTT

                        *                     *          
        531 TTATATGTCATCGAGCATATATCCTGTGGTGGTAGAGTACCGGAC
          1 TTATATGTCATCAAGCATATATCCTGTGGTGGTAAAGTACCGGAC

                                   *                      
        576 TTATATGTCATCAAGCAT-T-TGGCT-TGGTGGTAAAGTACCGGAC
          1 TTATATGTCATCAAGCATATAT-CCTGTGGTGGTAAAGTACCGGAC

             
        619 T
          1 T

        620 CGAAGCTCCA


Statistics
Matches: 40,  Mismatches: 3, Indels: 4
        0.85            0.06        0.09

Matches are distributed among these distances:
  43   20  0.50
  44    3  0.08
  45   17  0.43

ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33


Consensus pattern (45 bp):   
TTATATGTCATCAAGCATATATCCTGTGGTGGTAAAGTACCGGAC
Done.