Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020110.1 Corchorus olitorius cultivar O-4 contig20143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66593

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15847--15955
41
2.7
41
85
5
132
18
10
17
54
1.70
28781--28845
31
2.1
31
100
0
130
43
7
15
33
1.75
29716--29748
15
2.2
15
100
0
66
42
12
9
36
1.74
30837--30896
19
3.3
18
69
21
54
41
18
11
28
1.85
30837--30904
35
1.9
35
96
0
127
42
16
13
27
1.85
33502--33545
23
1.9
23
95
0
79
47
4
13
34
1.63
34527--34582
20
2.8
22
77
20
61
7
25
0
67
1.15
36602--36692
47
1.9
47
100
0
182
30
14
21
32
1.93
41694--41722
2
14.5
2
100
0
58
48
0
0
51
1.00
47060--47089
5
6.0
5
96
0
51
0
43
0
56
0.99
48736--50273
199
7.7
199
88
1
2152
35
17
13
33
1.89
51186--51236
26
2.0
26
88
0
75
27
21
3
47
1.68
51926--51955
2
15.0
2
100
0
60
50
0
0
50
1.00
54175--54315
3
46.3
3
95
1
246
34
0
0
65
0.98
59861--59904
20
2.1
21
88
12
65
50
11
4
34
1.59
59967--60144
85
2.1
86
93
2
304
49
8
10
31
1.67
60173--60211
20
1.9
20
84
5
51
53
7
7
30
1.57
60298--60348
25
2.0
25
88
7
77
49
3
13
33
1.61
60532--60605
22
3.4
22
81
5
78
50
8
13
28
1.70
60588--60639
27
1.9
27
88
0
77
63
3
13
19
1.44
60684--60758
20
3.8
20
75
10
73
44
1
14
40
1.54
61074--61104
16
1.9
16
93
0
53
58
0
9
32
1.31

Tables:   1

The End!