genome.fa.s20111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020111.1 Corchorus olitorius cultivar O-4 contig20144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136029

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5493--5518	10	2.6	10	100	0	52	19	0	26	53	1.45
5857--5893	18	2.1	18	90	5	58	64	0	2	32	1.07
7162--7227	30	2.2	30	97	0	123	13	15	7	63	1.50
8072--8122	26	2.0	26	100	0	102	52	3	3	39	1.38
8657--9701	350	3.0	349	85	2	1445	35	17	17	30	1.92
9969--10014	17	2.9	16	81	12	51	43	0	2	54	1.12
15477--15516	16	2.5	17	76	15	50	65	0	0	35	0.93
15558--15600	19	2.4	19	84	7	54	46	4	2	46	1.36
15555--15609	22	2.6	21	80	13	69	47	3	1	47	1.30
18523--18637	57	2.0	57	96	0	212	32	15	17	34	1.91
27426--28169	51	14.7	50	74	8	567	43	4	14	37	1.65
27428--28221	101	7.9	101	81	6	459	43	4	14	37	1.65
27428--28169	152	4.9	148	77	8	658	43	4	14	37	1.65
28724--28765	19	2.2	19	100	0	84	42	23	16	16	1.88
28743--28824	29	2.9	28	85	3	119	41	20	19	18	1.91
29074--29344	35	7.7	35	89	1	382	26	20	19	32	1.97
45992--46178	29	6.5	29	87	4	281	39	23	20	17	1.92
52303--52332	2	15.0	2	100	0	60	50	0	0	50	1.00
52593--52629	18	2.1	18	89	0	56	48	5	10	35	1.61
57429--57589	51	3.2	51	78	6	130	46	5	11	36	1.64
57506--57667	50	3.2	51	85	6	215	47	2	12	37	1.55
57466--57665	101	2.0	101	82	5	244	46	4	12	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57519--57733	51	4.2	51	81	8	122	44	6	12	36	1.67
57636--57733	51	1.9	51	83	4	126	39	10	15	34	1.81
58202--58323	40	3.0	40	86	0	181	18	25	19	36	1.95
58273--58407	47	2.8	48	89	2	209	21	22	17	38	1.93
61284--61333	14	3.7	13	80	17	57	42	8	12	38	1.71
61284--61340	14	4.3	13	79	18	55	38	7	14	40	1.73
61964--62007	15	2.9	16	83	10	56	77	2	18	2	0.98
63097--63312	69	3.1	69	92	2	344	23	27	19	29	1.98
63434--63534	47	2.1	47	89	3	150	17	24	18	38	1.93
66923--67043	51	2.4	51	84	4	156	42	4	15	36	1.69
67055--67254	50	4.0	50	86	6	271	49	2	11	36	1.52
67055--67254	99	2.0	100	88	2	296	49	2	11	36	1.52
67131--67323	51	3.8	51	78	11	134	45	6	15	33	1.71
67792--67912	40	3.0	40	84	2	163	19	23	19	38	1.93
67867--67996	47	2.8	48	89	2	192	22	22	16	38	1.93
69907--70006	29	3.4	30	82	8	125	31	17	14	38	1.89
70171--70225	29	2.0	28	82	7	67	27	14	16	41	1.87
80337--80374	20	1.9	20	88	0	58	13	2	18	65	1.37
80334--80376	10	4.3	10	75	0	50	16	2	23	58	1.50
81616--81674	24	2.5	24	100	0	118	20	35	32	11	1.89
83863--83948	33	2.6	33	80	10	95	10	36	36	17	1.84
92909--92933	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105366--105400	14	2.4	14	90	4	52	14	5	11	68	1.37
105366--105405	15	2.7	14	88	7	53	12	7	10	70	1.35
108715--108757	21	2.0	21	86	0	59	16	51	23	9	1.73
112354--112383	14	2.1	15	93	6	53	13	6	6	73	1.24
115848--115894	19	2.5	19	92	0	85	34	4	42	19	1.70
115851--115898	17	2.8	17	80	17	55	29	6	39	25	1.80
117637--117695	27	2.2	27	90	0	91	38	22	22	16	1.93
117644--117697	27	2.0	27	96	0	99	33	27	22	16	1.95

Tables:   1

The End!