Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020115.1 Corchorus olitorius cultivar O-4 contig20148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28392

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2062--2112
7
7.0
7
77
14
50
3
9
1
84
0.83
2065--2112
15
3.1
15
79
5
60
4
8
2
85
0.80
2999--3255
52
5.0
52
92
0
417
34
20
15
29
1.94
6709--6831
36
3.2
36
82
11
113
30
9
10
49
1.69
8687--8726
6
6.7
6
85
0
53
2
10
5
82
0.91
9159--9206
16
3.1
15
82
8
53
12
10
16
60
1.58
9199--9456
129
2.0
129
100
0
516
20
11
16
51
1.75
9618--9666
25
2.0
25
100
0
98
40
16
10
32
1.82
17376--17421
23
2.0
23
88
12
69
8
19
0
71
1.11
17488--17560
33
2.2
34
87
2
103
15
41
34
9
1.79
22015--22050
16
2.2
16
90
5
54
55
0
5
38
1.23
26848--26879
1
32.0
1
100
0
64
100
0
0
0
0.00
28048--28227
99
1.8
98
92
2
308
54
1
11
33
1.43
28264--28324
32
1.9
32
93
0
104
47
6
19
26
1.74
28348--28382
2
17.0
2
94
5
61
48
0
2
48
1.16

Tables:   1

The End!