Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020124.1 Corchorus olitorius cultivar O-4 contig20157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5903
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:3513 original size:22 final size:21

Alignment explanation


    Indices: 3461--3515  Score: 62
    Period size: 19  Copynumber: 2.7  Consensus size: 21

       3451 GCTTCTTGGA

                                  
       3461 AATAATTCTTC-AATGGTCTTC
          1 AATAA-TCTTCAAATGGTCTTC

                          *      
       3482 -A-AATCTTCAAATTGTCTTC
          1 AATAATCTTCAAATGGTCTTC

                           
       3501 AATAAGTCTTCAAAT
          1 AATAA-TCTTCAAAT

       3516 ACGAACTTCG


Statistics
Matches: 29,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    5  0.17
  19   11  0.38
  20    2  0.07
  21    2  0.07
  22    9  0.31

ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40


Consensus pattern (21 bp):   
AATAATCTTCAAATGGTCTTC
Done.