Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020125.1 Corchorus olitorius cultivar O-4 contig20158, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1864
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:897 original size:114 final size:114

Alignment explanation


    Indices: 697--926  Score: 460
    Period size: 114  Copynumber: 2.0  Consensus size: 114

        687 TAATTACCTA

                                                                             
        697 AAGGAGAAGAAGTATGTTTTTAATCCATTATATGTCTCAAACTATTTTCTTAATCTTTAGTTTTA
          1 AAGGAGAAGAAGTATGTTTTTAATCCATTATATGTCTCAAACTATTTTCTTAATCTTTAGTTTTA

                                                             
        762 TTTTATTTCATTGGTTTCTAGTTCAATTTGTCTATTTTGAAAAACCCAT
         66 TTTTATTTCATTGGTTTCTAGTTCAATTTGTCTATTTTGAAAAACCCAT

                                                                             
        811 AAGGAGAAGAAGTATGTTTTTAATCCATTATATGTCTCAAACTATTTTCTTAATCTTTAGTTTTA
          1 AAGGAGAAGAAGTATGTTTTTAATCCATTATATGTCTCAAACTATTTTCTTAATCTTTAGTTTTA

                                                             
        876 TTTTATTTCATTGGTTTCTAGTTCAATTTGTCTATTTTGAAAAACCCAT
         66 TTTTATTTCATTGGTTTCTAGTTCAATTTGTCTATTTTGAAAAACCCAT

              
        925 AA
          1 AA

        927 AAATCCCCTT


Statistics
Matches: 116,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 114  116  1.00

ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47


Consensus pattern (114 bp):   
AAGGAGAAGAAGTATGTTTTTAATCCATTATATGTCTCAAACTATTTTCTTAATCTTTAGTTTTA
TTTTATTTCATTGGTTTCTAGTTCAATTTGTCTATTTTGAAAAACCCAT
Done.