Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020129.1 Corchorus olitorius cultivar O-4 contig20162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73967

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
811--944
66
2.0
66
94
0
232
27
15
13
43
1.84
16707--16760
27
2.0
27
100
0
108
37
14
11
37
1.82
16666--16798
69
1.9
69
90
0
212
36
12
12
38
1.81
20398--20502
35
3.0
34
88
4
165
34
22
23
19
1.96
31920--31962
20
2.2
20
87
8
61
4
23
0
72
1.04
33018--33043
2
13.0
2
100
0
52
50
0
0
50
1.00
39857--39905
26
1.9
26
88
12
75
57
0
0
42
0.99
40003--40063
29
2.1
30
87
3
88
42
3
3
50
1.34
47029--47064
15
2.4
15
100
0
72
13
16
25
44
1.85
52519--52559
20
2.0
20
95
0
73
26
9
24
39
1.86
58656--59124
50
9.5
49
76
10
319
42
5
14
37
1.68
58800--59161
51
7.2
50
77
6
301
43
4
15
36
1.68
58800--59052
101
2.5
100
84
3
319
43
4
14
37
1.66
59713--60099
49
7.9
49
89
1
589
16
22
19
41
1.90
60062--60548
41
12.0
41
86
3
646
13
28
19
37
1.90
64514--64573
26
2.3
26
85
2
75
31
8
21
38
1.83
64557--64638
43
1.9
43
84
0
110
32
7
21
37
1.81
64635--64680
7
6.6
7
94
0
65
23
0
21
54
1.45
64639--64679
14
2.9
14
92
0
73
19
0
21
58
1.39
64610--64679
28
2.5
28
83
0
86
22
2
21
52
1.60
64812--64889
33
2.4
33
86
0
102
34
6
15
43
1.72
64952--65089
54
2.6
54
85
2
197
37
21
14
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65121--65162
18
2.3
18
83
0
57
52
9
14
23
1.71
65200--65648
37
12.1
37
79
5
406
44
15
16
23
1.86
65186--65648
74
6.2
74
83
3
531
43
15
17
23
1.87
65196--65648
111
4.1
110
79
5
480
44
15
16
22
1.86
65200--65630
149
2.9
149
83
3
467
44
15
16
22
1.86
68318--68357
15
2.6
16
88
4
55
15
10
12
62
1.54
68765--68837
29
2.5
30
84
4
87
39
6
10
42
1.67

Tables:   1

The End!