Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020131.1 Corchorus olitorius cultivar O-4 contig20164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64074

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1341--1384
14
3.4
12
84
9
52
31
0
11
56
1.35
1338--1371
12
2.7
13
86
4
52
29
0
14
55
1.40
3113--3155
17
2.4
17
78
21
52
41
0
9
48
1.35
2849--3430
198
2.9
200
88
1
857
33
14
17
34
1.90
3749--3779
16
1.9
16
93
0
53
54
0
9
35
1.33
5601--5734
49
2.8
47
83
8
155
27
19
6
46
1.75
8325--8374
15
3.3
15
85
0
64
42
12
26
20
1.86
12924--13026
31
3.4
31
81
5
95
29
25
12
33
1.92
16865--16949
39
2.2
39
97
0
161
22
15
17
44
1.86
18045--18069
3
8.3
3
100
0
50
36
64
0
0
0.94
22342--22400
30
2.0
30
93
6
102
28
18
33
18
1.95
34643--34677
18
1.9
18
88
11
54
11
22
25
40
1.88
36258--36309
27
1.9
27
92
7
88
50
9
5
34
1.59
36259--36325
27
2.6
26
80
15
77
47
10
4
37
1.58
39910--39945
19
1.9
18
88
5
54
36
22
0
41
1.54
50727--51155
218
2.0
210
84
8
548
32
24
10
33
1.89
52476--52510
17
2.0
18
88
5
54
34
28
0
37
1.58
60574--60646
30
2.4
31
79
2
94
36
10
20
31
1.87

Tables:   1

The End!