Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020132.1 Corchorus olitorius cultivar O-4 contig20165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4891
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:2519 original size:76 final size:76

Alignment explanation


    Indices: 2393--2589  Score: 378
    Period size: 76  Copynumber: 2.6  Consensus size: 76

       2383 ATGTGGATCG

                                                                             
       2393 ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACATGGCCTTCGAATGCGGGGC
          1 ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACATGGCCTTCGAATGCGGGGC

             *         
       2458 GTAGACAATCC
         66 GCAGACAATCC

                                                                             
       2469 ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACATGGCCTTCGAATGCGGGGC
          1 ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACATGGCCTTCGAATGCGGGGC

                       
       2534 GCAGACAATCC
         66 GCAGACAATCC

                                                          
       2545 ATATATGCATT-AAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACA
          1 ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACA

       2590 GGCTCACGCA


Statistics
Matches: 120,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
  75   34  0.28
  76   86  0.72

ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27


Consensus pattern (76 bp):   
ATATATGCATTAAAAGTTTAGGTCTGGGTTTGGCCATGAAGAAACATGGCCTTCGAATGCGGGGC
GCAGACAATCC
Done.