Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020134.1 Corchorus olitorius cultivar O-4 contig20167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28315
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Found at i:2937 original size:38 final size:37
Alignment explanation
Indices: 2886--2967 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 37
2876 ATGTCCTCAA
2886 TTGCTGGCTCTCCCAATTTGCATATCTGATACTTTCAG
1 TTGCTGGCTCTCCCAATTTGCATATCTGATACTTTC-G
2924 TTGCTGGCTCTCCCAATTTGCATATCTGATACTTTCG
1 TTGCTGGCTCTCCCAATTTGCATATCTGATACTTTCG
2961 TGTGCTG
1 T-TGCTG
2968 AGGCAGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 2 0.05
38 41 0.95
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (37 bp):
TTGCTGGCTCTCCCAATTTGCATATCTGATACTTTCG
Found at i:3176 original size:42 final size:42
Alignment explanation
Indices: 3117--3222 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
3107 CCACACTACT
* * *
3117 AATCATTCAGAATACATATATTTTTTGCACGTATTGATTATC
1 AATCATTCAGAATACATATAGTTTTGGCACGTATTGATAATC
* * *
3159 AATCATTCAGAATACATATAGTTTTGGTATGTATTGATAATT
1 AATCATTCAGAATACATATAGTTTTGGCACGTATTGATAATC
*
3201 AATCATTCAGAATACAGATAGT
1 AATCATTCAGAATACATATAGT
3223 AACCCCATTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (42 bp):
AATCATTCAGAATACATATAGTTTTGGCACGTATTGATAATC
Found at i:6874 original size:35 final size:35
Alignment explanation
Indices: 6820--6897 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 35
6810 TAAATAGCAA
* *
6820 GTAGCCATAGCTAGGGTATCATCCAAAGACCAGGG
1 GTAGCCATAACTAGAGTATCATCCAAAGACCAGGG
6855 GTAGCCATAACTAGAGTATCATCCAAAGACCAGGG
1 GTAGCCATAACTAGAGTATCATCCAAAGACCAGGG
*
6890 GCAGCCAT
1 GTAGCCAT
6898 CATTAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (35 bp):
GTAGCCATAACTAGAGTATCATCCAAAGACCAGGG
Found at i:6911 original size:35 final size:35
Alignment explanation
Indices: 6837--6911 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
6827 TAGCTAGGGT
* * **
6837 ATCATCCAAAGACCAGGGGTAGCCATAACTAGAGT
1 ATCATCCAAAGACCAGGGGCAGCCATAACTAAAAA
* *
6872 ATCATCCAAAGACCAGGGGCAGCCATCATTAAAAA
1 ATCATCCAAAGACCAGGGGCAGCCATAACTAAAAA
6907 ATCAT
1 ATCAT
6912 GAGCTTGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (35 bp):
ATCATCCAAAGACCAGGGGCAGCCATAACTAAAAA
Found at i:9896 original size:15 final size:15
Alignment explanation
Indices: 9876--9905 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9866 TTCAGTTTAG
9876 CCTTATAAGGAGAGA
1 CCTTATAAGGAGAGA
9891 CCTTATAAGGAGAGA
1 CCTTATAAGGAGAGA
9906 AACAAGAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (15 bp):
CCTTATAAGGAGAGA
Found at i:17349 original size:7 final size:7
Alignment explanation
Indices: 17339--17408 Score: 81
Period size: 7 Copynumber: 10.3 Consensus size: 7
17329 GTCTTTCTTC
17339 TTTTCAT
1 TTTTCAT
17346 TTTTCAT
1 TTTTCAT
17353 TTTTCAT
1 TTTTCAT
17360 TTTTCAT
1 TTTTCAT
*
17367 TTGTCAT
1 TTTTCAT
*
17374 TTTTCCT
1 TTTTCAT
* *
17381 TTCTCTT
1 TTTTCAT
*
17388 TTTTCTT
1 TTTTCAT
17395 TTTTC-T
1 TTTTCAT
17401 TTTT-AT
1 TTTTCAT
17407 TT
1 TT
17409 CCAACTCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
6 8 0.14
7 48 0.86
ACGTcount: A:0.09, C:0.16, G:0.01, T:0.74
Consensus pattern (7 bp):
TTTTCAT
Found at i:18279 original size:21 final size:21
Alignment explanation
Indices: 18235--18285 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
18225 TACTTCTGTT
**
18235 AAAAAAAATCTATATCCACAA
1 AAAAAAAATCTATATAAACAA
18256 AAAAAAAATCTATGATAAACAA
1 AAAAAAAATCTAT-ATAAACAA
*
18278 AACAAAAA
1 AAAAAAAA
18286 GGTTTCCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.69, C:0.14, G:0.02, T:0.16
Consensus pattern (21 bp):
AAAAAAAATCTATATAAACAA
Found at i:18636 original size:7 final size:6
Alignment explanation
Indices: 18620--18680 Score: 95
Period size: 6 Copynumber: 9.7 Consensus size: 6
18610 CTTTCGTAAA
18620 AAAAAC AAAAAC AAAAAAC AAAAAAC AAAAAC AAAAAAC AAAAAC AAAAAC
1 AAAAAC AAAAAC -AAAAAC -AAAAAC AAAAAC -AAAAAC AAAAAC AAAAAC
18671 AAAAAC AAAA
1 AAAAAC AAAA
18681 GTACGTAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
6 34 0.64
7 19 0.36
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:18637 original size:13 final size:13
Alignment explanation
Indices: 18620--18680 Score: 99
Period size: 13 Copynumber: 4.8 Consensus size: 13
18610 CTTTCGTAAA
18620 AAAAAC-AAAAAC
1 AAAAACAAAAAAC
18632 AAAAAACAAAAAAC
1 -AAAAACAAAAAAC
18646 AAAAACAAAAAAC
1 AAAAACAAAAAAC
18659 AAAAAC-AAAAAC
1 AAAAACAAAAAAC
18671 AAAAACAAAA
1 AAAAACAAAA
18681 GTACGTAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.26
13 28 0.61
14 6 0.13
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAC
Found at i:19556 original size:66 final size:66
Alignment explanation
Indices: 19466--19631 Score: 296
Period size: 66 Copynumber: 2.5 Consensus size: 66
19456 CATAGAAAGA
* ** *
19466 TTATCAAAATTTCGTAGTGTGGTTACCAAAATTTCATATAGAAGTTATCAAAACTTCATAGTGTA
1 TTATCAAAATTTCATACAGAGGTTACCAAAATTTCATATAGAAGTTATCAAAACTTCATAGTGTA
19531 G
66 G
19532 TTATCAAAATTTCATACAGAGGTTACCAAAATTTCATATAGAAGTTATCAAAACTTCATAGTGTA
1 TTATCAAAATTTCATACAGAGGTTACCAAAATTTCATATAGAAGTTATCAAAACTTCATAGTGTA
19597 G
66 G
19598 TTATCAAAATTTCATACAGAGGTTACCAAAATTT
1 TTATCAAAATTTCATACAGAGGTTACCAAAATTT
19632 AATAGGGAGG
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 96 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (66 bp):
TTATCAAAATTTCATACAGAGGTTACCAAAATTTCATATAGAAGTTATCAAAACTTCATAGTGTA
G
Found at i:19641 original size:22 final size:22
Alignment explanation
Indices: 19448--19983 Score: 234
Period size: 22 Copynumber: 24.2 Consensus size: 22
19438 ACAATCAAAC
* * *
19448 CAAAATTACATAGAAAGATTAT
1 CAAAATTTCATAGAGAGGTTAT
* * * *
19470 CAAAATTTCGTAGTGTGGTTAC
1 CAAAATTTCATAGAGAGGTTAT
* *
19492 CAAAATTTCATATAGAAGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19514 CAAAACTTCATAGTGTA-GTTAT
1 CAAAATTTCATAGAG-AGGTTAT
* *
19536 CAAAATTTCATACAGAGGTTAC
1 CAAAATTTCATAGAGAGGTTAT
* *
19558 CAAAATTTCATATAGAAGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19580 CAAAACTTCATAGTGTA-GTTAT
1 CAAAATTTCATAGAG-AGGTTAT
* *
19602 CAAAATTTCATACAGAGGTTAC
1 CAAAATTTCATAGAGAGGTTAT
* *
19624 CAAAATTTAATAGGGAGGGAGGTTAC
1 CAAAATTTCATA--GA--GAGGTTAT
* *
19650 CAAAA-TT--T---GCGCTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19666 CAAAATTTCCTAGAGAGGTTAA
1 CAAAATTTCATAGAGAGGTTAT
* *
19688 CAAAATTTTATAGGGAGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* * *
19710 GAAAATTTTATGGAGAGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19732 CGAAAA-TACATAGAGAGGATAT
1 C-AAAATTTCATAGAGAGGTTAT
* *
19754 CACAGTTTCATTCTCATAGGGAGGTTAT
1 CA-A----AATT-TCATAGAGAGGTTAT
* * * *
19782 CGAAATTTCATGGTGTGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* * *
19804 CAAAATTTTCATAGTGCGGTT-G
1 CAAAA-TTTCATAGAGAGGTTAT
* * * * *
19826 C-CAATTTTATTTAGTGTGATTAT
1 CAAAATTTCA--TAGAGAGGTTAT
* * *
19849 TAAAATTTTATAG-GCAGATTAT
1 CAAAATTTCATAGAG-AGGTTAT
* ** *
19871 CAAAATTTCACACTGAGATTAT
1 CAAAATTTCATAGAGAGGTTAT
* * * *
19893 CGAAATTTCATAGTGTGGTTAC
1 CAAAATTTCATAGAGAGGTTAT
* * ***
19915 CCAAATTTCACAGTCTGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19937 CAAATTTTCATAGGGAGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
* *
19959 CGAAATTTCATA-TGAGGTTAT
1 CAAAATTTCATAGAGAGGTTAT
19980 CAAA
1 CAAA
19984 TTTGCAAAAT
Statistics
Matches: 390, Mismatches: 95, Indels: 59
0.72 0.17 0.11
Matches are distributed among these distances:
16 10 0.03
17 2 0.01
19 1 0.00
20 4 0.01
21 17 0.04
22 293 0.75
23 24 0.06
24 8 0.02
25 2 0.01
26 14 0.04
27 2 0.01
28 13 0.03
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (22 bp):
CAAAATTTCATAGAGAGGTTAT
Found at i:20001 original size:22 final size:21
Alignment explanation
Indices: 19867--20010 Score: 74
Period size: 22 Copynumber: 6.6 Consensus size: 21
19857 TATAGGCAGA
* * *
19867 TTATCAAAATTTCACACTGAGA
1 TTATC-AAATTTCAAAATGAGG
* * *
19889 TTATCGAAATTTCATAGTGTGG
1 TTATC-AAATTTCAAAATGAGG
* * * **
19911 TTACCCAAATTTCACAGTCTGG
1 TTA-TCAAATTTCAAAATGAGG
* **
19933 TTATCAAATTTTCATAGGGAGG
1 TTATCAAA-TTTCAAAATGAGG
*
19955 TTATCGAAATTTC-ATATGAGG
1 TTATC-AAATTTCAAAATGAGG
*
19976 TTATCAAATTTGCAAAATGTGG
1 TTATCAAATTT-CAAAATGAGG
19998 TTATCAATATTTC
1 TTATCAA-ATTTC
20011 TACATTGGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
20 6 0.06
21 14 0.14
22 69 0.71
23 8 0.08
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (21 bp):
TTATCAAATTTCAAAATGAGG
Found at i:21923 original size:22 final size:21
Alignment explanation
Indices: 21746--21923 Score: 72
Period size: 22 Copynumber: 8.0 Consensus size: 21
21736 ACAATCAAAC
*
21746 CAAAATTACATAGGAAGGTTAT
1 CAAAATTTCATA-GAAGGTTAT
* ** *
21768 TAAAATTTCATAGTGTGGTTAC
1 CAAAATTTCATAG-AAGGTTAT
* *
21790 CAAAATTTCATAGGAGTTTAT
1 CAAAATTTCATAGAAGGTTAT
* * *
21811 CAAAACTTCGTAGTGTAA--TCAT
1 CAAAATTTCATA--G-AAGGTTAT
* * *
21833 CAAAATTTCATATAGATGTTAC
1 CAAAATTTCATAGA-AGGTTAT
*
21855 CAAAATTTCATAAAAAAAAGGTTAT
1 CAAAATTTCAT----AGAAGGTTAT
* * * *
21880 CAAAATCTCTTATGGAGATTAT
1 CAAAATTTCATA-GAAGGTTAT
21902 CAAAATTTCATACGAAGGTTAT
1 CAAAATTTCATA-GAAGGTTAT
21924 TGAAATTTTA
Statistics
Matches: 113, Mismatches: 31, Indels: 24
0.67 0.18 0.14
Matches are distributed among these distances:
19 1 0.01
20 1 0.01
21 17 0.15
22 76 0.67
23 1 0.01
24 1 0.01
25 14 0.12
26 2 0.02
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (21 bp):
CAAAATTTCATAGAAGGTTAT
Found at i:22048 original size:22 final size:22
Alignment explanation
Indices: 22003--22354 Score: 122
Period size: 22 Copynumber: 15.6 Consensus size: 22
21993 AAATTTGTTC
* *
22003 TTATCGAAATTTCCTA-GGATGG
1 TTATCAAAATTTCATAGGGA-GG
*
22025 TTAACAAAATTTCATAGGGAGG
1 TTATCAAAATTTCATAGGGAGG
*
22047 TTATGAAAATATT-AT-GGAGAGG
1 TTATCAAAAT-TTCATAGG-GAGG
* ** *
22069 TTATCAAAATTACATATAGAGA
1 TTATCAAAATTTCATAGGGAGG
* * *
22091 ATATCACAATTTCATTCTTATAGGGAAG
1 TTATCA-AA----ATT-TCATAGGGAGG
* *
22119 TTATCGAAATTTCAT-GGTGTGG
1 TTATCAAAATTTCATAGG-GAGG
* * *
22141 TTATCAAAATTTTCATAGTGCGA
1 TTATCAAAA-TTTCATAGGGAGG
* * ** * *
22164 TTA-C-CAATTTTATAATGTGA
1 TTATCAAAATTTCATAGGGAGG
*
22184 TTATCAAAATTTCATAGACAATGAGG
1 TTATCAAAATTTCATAG----GGAGG
* * * *
22210 TTATCAAAACTTCATTGTGTGG
1 TTATCAAAATTTCATAGGGAGG
* * * *
22232 TTATCAGAATTTCACAGTGTGG
1 TTATCAAAATTTCATAGGGAGG
* ** *
22254 TTATCAAAATTTCACATTGTGG
1 TTATCAAAATTTCATAGGGAGG
*
22276 TTATCAAATTTTCATAGGGAGG
1 TTATCAAAATTTCATAGGGAGG
* * **
22298 TTATCGAAATTTCACAATGAGG
1 TTATCAAAATTTCATAGGGAGG
* * * *
22320 TTATCAAATTTTCGTAGTGTGG
1 TTATCAAAATTTCATAGGGAGG
*
22342 TTATCAATATTTC
1 TTATCAAAATTTC
22355 TACGTTGGAG
Statistics
Matches: 248, Mismatches: 62, Indels: 40
0.71 0.18 0.11
Matches are distributed among these distances:
20 13 0.05
21 8 0.03
22 173 0.70
23 21 0.08
24 1 0.00
26 18 0.07
27 5 0.02
28 9 0.04
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (22 bp):
TTATCAAAATTTCATAGGGAGG
Found at i:22275 original size:44 final size:44
Alignment explanation
Indices: 22118--22354 Score: 176
Period size: 44 Copynumber: 5.3 Consensus size: 44
22108 TTATAGGGAA
* *** *
22118 GTTATCGAAATTTCATGGTGTGGTTATCAAAATTTTCATAGTGCG
1 GTTATCAAAATTTCACATTGTGGTTATC-AAATTTTCATAGTGTG
* * * * * * * *
22163 ATTA-C-CAATTTTATAATGTGATTATCAAAATTTCATAGACAATGAG
1 GTTATCAAAATTTCACATTGTGGTTATCAAATTTTCATAG----TGTG
* * *
22209 GTTATCAAAACTTCA-TTGTGTGGTTATCAGAA-TTTCACAGTGTG
1 GTTATCAAAATTTCACAT-TGTGGTTATCA-AATTTTCATAGTGTG
* *
22253 GTTATCAAAATTTCACATTGTGGTTATCAAATTTTCATAGGGAG
1 GTTATCAAAATTTCACATTGTGGTTATCAAATTTTCATAGTGTG
* * * *
22297 GTTATCGAAATTTCACAATGAGGTTATCAAATTTTCGTAGTGTG
1 GTTATCAAAATTTCACATTGTGGTTATCAAATTTTCATAGTGTG
*
22341 GTTATCAATATTTC
1 GTTATCAAAATTTC
22355 TACGTTGGAG
Statistics
Matches: 152, Mismatches: 30, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
42 11 0.07
43 18 0.12
44 88 0.58
45 4 0.03
46 6 0.04
47 1 0.01
48 22 0.14
49 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (44 bp):
GTTATCAAAATTTCACATTGTGGTTATCAAATTTTCATAGTGTG
Found at i:22285 original size:91 final size:92
Alignment explanation
Indices: 22118--22292 Score: 203
Period size: 91 Copynumber: 1.9 Consensus size: 92
22108 TTATAGGGAA
* * * * * *
22118 GTTATCGAAATTTCATGGTGTGGTTATCAAAATTTTCATAGTGCGATTACCAATTTTATAATGTG
1 GTTATCAAAACTTCATGGTGTGGTTATCAAAATTTTCACAGTGCGATTACAAATTTCACAATGTG
22183 ATTATCAAAA-TTTCATAGACAATGAG
66 ATTATCAAAATTTTCATAGACAATGAG
* * * * *
22209 GTTATCAAAACTTCATTGTGTGGTTATCAGAA-TTTCACAGTGTGGTTATCAAAATTTCACATTG
1 GTTATCAAAACTTCATGGTGTGGTTATCAAAATTTTCACAGTGCGATTA-C-AAATTTCACAATG
*
22273 TGGTTATC-AAATTTTCATAG
64 TGATTATCAAAATTTTCATAG
22293 GGAGGTTATC
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
90 13 0.19
91 32 0.46
92 24 0.35
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (92 bp):
GTTATCAAAACTTCATGGTGTGGTTATCAAAATTTTCACAGTGCGATTACAAATTTCACAATGTG
ATTATCAAAATTTTCATAGACAATGAG
Found at i:22949 original size:21 final size:21
Alignment explanation
Indices: 22923--22969 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
22913 AAAGACAAAA
22923 ACATTAACTTCACGATTTTCT
1 ACATTAACTTCACGATTTTCT
22944 ACATTAACTTCACGATTTTCT
1 ACATTAACTTCACGATTTTCT
22965 ACATT
1 ACATT
22970 TCCACACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.43
Consensus pattern (21 bp):
ACATTAACTTCACGATTTTCT
Found at i:23826 original size:19 final size:19
Alignment explanation
Indices: 23802--23841 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23792 ATTCTAATGT
*
23802 CTATTCAAATAATTATCTA
1 CTATTCAAACAATTATCTA
*
23821 CTATTCAGACAATTATCTA
1 CTATTCAAACAATTATCTA
23840 CT
1 CT
23842 GGATCCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (19 bp):
CTATTCAAACAATTATCTA
Found at i:24247 original size:130 final size:130
Alignment explanation
Indices: 24014--24266 Score: 443
Period size: 130 Copynumber: 1.9 Consensus size: 130
24004 GGACAAATGT
* *
24014 CAACAGAAGAAAAGCCAAATGTTGAGTATACAACAGCTTGAGGATAACTTTAACAGTAAGGTATA
1 CAACAGAAGAAAAGCCAAATGATGAGCATACAACAGCTTGAGGATAACTTTAACAGTAAGGTATA
24079 GATTAACAAAAAAATTATATTACACAAGATGTAATTTAAAATCAGTTTTCATCAAACTGAGCATA
66 GATTAACAAAAAAATTATATTACACAAGATGTAATTTAAAATCAGTTTTCATCAAACTGAGCATA
* * * * *
24144 CAACAGGAGAAATGCCAAATGATGAGCATACAATAGTTTGAGGATAACTTTAATAGTAAGGTATA
1 CAACAGAAGAAAAGCCAAATGATGAGCATACAACAGCTTGAGGATAACTTTAACAGTAAGGTATA
24209 GATTAACAAAAAAATTATATTACACAAGATGTAATTTAAAATCAGTTTTCATCAAACT
66 GATTAACAAAAAAATTATATTACACAAGATGTAATTTAAAATCAGTTTTCATCAAACT
24267 TCAATCCCAC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
130 116 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (130 bp):
CAACAGAAGAAAAGCCAAATGATGAGCATACAACAGCTTGAGGATAACTTTAACAGTAAGGTATA
GATTAACAAAAAAATTATATTACACAAGATGTAATTTAAAATCAGTTTTCATCAAACTGAGCATA
Done.