Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020139.1 Corchorus olitorius cultivar O-4 contig20172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15854

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1780--2121
47
7.3
47
91
2
535
28
20
4
45
1.71
1780--2121
189
1.8
189
90
2
553
28
20
4
45
1.71
2080--2151
38
1.9
37
94
2
126
27
22
2
47
1.65
2179--2228
17
3.0
16
82
8
55
34
24
22
20
1.97
2396--2678
94
3.0
94
93
1
487
29
21
4
44
1.73
2396--2678
47
6.0
47
89
0
433
29
21
4
44
1.73
5883--5925
16
2.6
17
81
7
61
41
37
16
4
1.69
7415--7471
15
3.6
15
75
17
53
40
36
15
7
1.75
8488--8536
25
2.0
25
100
0
98
36
8
22
32
1.84

Tables:   1

The End!