Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020140.1 Corchorus olitorius cultivar O-4 contig20173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72040

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4585--4641
21
2.6
22
83
2
71
12
17
47
22
1.81
4587--4647
22
2.9
21
82
2
68
11
18
47
22
1.80
16933--16965
16
1.9
18
88
11
52
42
9
30
18
1.81
31897--31927
9
3.4
9
100
0
62
9
22
48
19
1.78
33901--33969
29
2.4
29
87
0
102
50
26
5
17
1.68
38793--38829
16
2.4
16
90
4
58
16
8
8
67
1.40
42029--42205
65
2.7
66
85
3
250
19
28
34
17
1.95
42018--42226
66
3.2
65
81
6
251
20
26
34
18
1.96
47252--47303
22
2.4
22
87
3
70
21
48
19
11
1.80
48005--48029
4
6.2
4
100
0
50
24
0
24
52
1.48
50610--50638
15
1.9
15
100
0
58
13
6
6
72
1.26
50810--51040
65
3.5
65
90
2
356
20
30
31
17
1.96
52282--52706
38
10.6
38
73
11
294
22
28
30
18
1.97
52198--52678
83
5.9
79
77
10
361
21
29
30
18
1.97
52199--52596
121
3.3
120
83
2
474
20
29
30
19
1.97
52289--52761
121
3.9
124
79
8
390
22
28
30
18
1.98
52320--52761
204
2.2
204
84
1
573
23
29
29
17
1.97
53136--53289
56
2.7
57
82
3
195
15
24
29
30
1.96
53150--53425
141
2.0
140
82
5
342
18
21
31
28
1.97
53293--53418
57
2.2
57
85
2
173
19
21
29
29
1.98
59902--59933
16
2.1
16
94
5
57
50
9
0
40
1.35
64977--65110
69
1.9
69
92
0
223
24
14
14
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70489--71029
215
2.5
215
95
0
974
32
25
21
20
1.97
71973--72038
2
32.0
2
93
6
114
48
1
48
1
1.20

Tables:   1

The End!