Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020143.1 Corchorus olitorius cultivar O-4 contig20176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21374

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284--316
3
11.0
3
87
12
50
69
0
0
30
0.88
933--985
28
1.9
28
88
3
81
26
22
15
35
1.93
2912--2957
24
2.0
23
87
8
67
54
4
0
41
1.20
3062--3119
29
2.0
30
86
3
82
43
3
1
51
1.28
5933--5988
21
2.5
22
80
13
62
75
1
23
0
0.90
5933--5987
22
2.5
22
85
2
67
76
1
21
0
0.88
7249--7333
25
3.6
24
66
28
65
37
3
1
57
1.23
7286--7336
22
2.2
24
80
16
63
39
0
0
60
0.97
7286--7334
25
2.0
25
88
8
73
38
0
0
61
0.96
12516--12562
3
15.7
3
100
0
94
0
31
0
68
0.90
12794--12839
2
23.0
2
100
0
92
0
0
50
50
1.00
18480--18531
26
1.9
28
88
7
81
17
13
9
59
1.60
19017--19185
86
2.0
86
96
1
313
33
10
7
48
1.65
19175--19229
22
2.5
22
77
11
60
30
9
10
49
1.69
19259--19306
23
2.2
22
85
10
64
29
12
10
47
1.74
19593--19643
20
2.4
22
90
6
79
35
9
5
49
1.60

Tables:   1

The End!