Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020156.1 Corchorus olitorius cultivar O-4 contig20189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6674
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:1948 original size:29 final size:29

Alignment explanation


    Indices: 1916--1993  Score: 93
    Period size: 29  Copynumber: 2.7  Consensus size: 29

       1906 AGGATCACCT

                                         
       1916 AGGGGCATTTTGGTCATTTTTAAAAACCC
          1 AGGGGCATTTTGGTCATTTTTAAAAACCC

                 **              ** * ** 
       1945 AGGGGTTTTTTGGTCATTTTTGCACATTC
          1 AGGGGCATTTTGGTCATTTTTAAAAACCC

                                
       1974 AGGGGCATTTTGGTCATTTT
          1 AGGGGCATTTTGGTCATTTT

       1994 AAGTTCACTT


Statistics
Matches: 40,  Mismatches: 9, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  29   40  1.00

ACGTcount: A:0.19, C:0.14, G:0.24, T:0.42


Consensus pattern (29 bp):   
AGGGGCATTTTGGTCATTTTTAAAAACCC

Found at i:4719 original size:11 final size:11

Alignment explanation


    Indices: 4703--4728  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       4693 CTAGCCCTAA

                       
       4703 AAAACTAGAAG
          1 AAAACTAGAAG

                       
       4714 AAAACTAGAAG
          1 AAAACTAGAAG

                
       4725 AAAA
          1 AAAA

       4729 GAAATTATCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08


Consensus pattern (11 bp):   
AAAACTAGAAG
Done.