Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020159.1 Corchorus olitorius cultivar O-4 contig20192, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3344
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34


Found at i:742 original size:18 final size:19

Alignment explanation


    Indices: 721--766  Score: 58
    Period size: 18  Copynumber: 2.4  Consensus size: 19

        711 TCCACCAGAT

                              *
        721 TTTTTTTTACCT-ACCTAC
          1 TTTTTTTTACCTAACCTAA

                    *          
        739 TTTTTTTTCCCTAACCTAA
          1 TTTTTTTTACCTAACCTAA

                     
        758 TTATTTTTT
          1 TT-TTTTTT

        767 TTCTTTCTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  18   11  0.46
  19    7  0.29
  20    6  0.25

ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61


Consensus pattern (19 bp):   
TTTTTTTTACCTAACCTAA

Done.