Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020160.1 Corchorus olitorius cultivar O-4 contig20193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3762
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33


Found at i:2658 original size:19 final size:19

Alignment explanation


    Indices: 2621--2659  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2611 CTCATATCTA

                          *    
       2621 CTTCATCTTCTCCAGCCTT
          1 CTTCATCTTCTCCAACCTT

                     * *       
       2640 CTTCATCTTTTTCAACCTT
          1 CTTCATCTTCTCCAACCTT

             
       2659 C
          1 C

       2660 CACTAATCTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.13, C:0.38, G:0.03, T:0.46


Consensus pattern (19 bp):   
CTTCATCTTCTCCAACCTT
Done.