genome.fa.s20167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020167.1 Corchorus olitorius cultivar O-4 contig20200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150408

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624--1684	27	2.3	27	82	0	68	34	13	22	29	1.92
6429--6483	19	3.1	17	77	17	58	74	1	5	18	1.10
6455--6689	118	2.1	108	89	7	353	65	3	13	17	1.39
7263--7293	2	15.5	2	93	0	53	51	0	3	45	1.17
8204--8302	49	2.0	50	88	2	146	24	19	17	39	1.92
31607--31649	19	2.3	19	100	0	86	37	13	16	32	1.88
32055--32110	28	2.0	28	100	0	112	17	10	32	39	1.84
34689--35018	178	1.9	178	87	3	486	36	16	12	34	1.86
35156--35201	18	2.5	19	89	3	67	43	10	8	36	1.71
37766--37818	20	2.7	19	94	5	88	37	16	24	20	1.93
37780--37819	12	3.7	12	75	25	52	35	17	25	22	1.95
37870--37908	12	3.6	12	74	25	50	33	15	25	25	1.95
43489--43644	56	2.8	56	97	0	287	37	6	14	41	1.71
45082--45186	29	3.3	29	84	12	111	33	14	4	47	1.65
45077--45157	38	2.1	38	100	0	162	30	12	4	51	1.60
45362--45510	31	4.6	31	80	11	154	34	26	23	16	1.95
45149--45393	136	1.8	132	86	6	350	31	20	15	33	1.93
50048--50139	47	2.0	47	87	4	134	63	14	11	10	1.53
52427--52843	107	3.7	107	77	12	364	43	7	11	37	1.69
55885--55957	35	2.1	34	87	7	103	10	1	38	49	1.47
56585--56725	35	4.0	35	89	3	203	27	15	17	39	1.89
56707--56746	21	1.9	21	85	10	55	27	25	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57375--57419	14	3.3	14	84	3	56	33	31	6	28	1.83
58679--58801	14	9.2	13	70	20	85	62	10	10	16	1.53
58679--58801	28	4.6	28	72	13	116	62	10	10	16	1.53
58665--58761	50	1.9	50	91	0	158	60	11	8	19	1.55
58665--58746	22	3.5	22	72	18	74	59	12	8	19	1.58
61285--61332	13	3.7	13	97	0	87	39	22	20	16	1.92
62212--62236	2	12.5	2	100	0	50	52	0	0	48	1.00
73211--73242	3	10.7	3	100	0	64	68	0	31	0	0.90
73596--73627	16	2.0	16	100	0	64	68	0	18	12	1.20
74060--74090	3	10.3	3	100	0	62	32	67	0	0	0.91
77996--78031	2	18.0	2	100	0	72	50	0	0	50	1.00
85031--85085	27	2.1	27	83	10	69	52	25	7	14	1.67
91479--91503	8	3.1	8	100	0	50	88	0	0	12	0.53
93823--93914	45	2.1	45	88	7	138	41	21	4	32	1.73
93989--94575	295	2.0	292	90	3	930	42	17	15	23	1.88
98594--98714	41	3.0	40	96	2	215	29	8	14	47	1.74
102252--102297	22	2.0	23	83	8	58	47	21	2	28	1.62
102888--102926	17	2.3	17	95	0	69	35	20	25	17	1.95
103822--103904	42	2.0	42	95	0	148	43	16	7	32	1.76
103970--104079	56	2.0	56	98	0	211	37	1	25	35	1.67
110717--110758	4	10.5	4	89	0	57	69	0	28	2	1.01
112743--112777	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118719--118801	39	2.1	39	82	8	98	63	18	10	7	1.48
118709--118815	45	2.3	46	82	4	117	60	16	14	7	1.56
118831--118891	3	20.3	3	96	0	113	65	1	32	0	1.02
127307--128358	439	2.4	436	83	4	1251	30	14	12	42	1.82
127307--128358	440	2.4	435	82	4	1249	30	14	12	42	1.82
128612--128677	34	1.9	34	93	0	114	54	18	6	21	1.64
130549--130617	33	2.1	33	97	0	129	43	23	10	23	1.84
131022--131061	21	2.1	19	86	13	55	20	27	15	37	1.92
131425--131510	31	2.9	29	80	16	104	75	3	10	10	1.16
142556--142621	33	2.0	33	87	0	96	27	19	13	39	1.89
145339--145371	12	2.6	13	85	9	50	12	0	18	69	1.18
145437--145554	61	2.0	60	89	1	182	38	8	12	40	1.74
146785--146834	24	2.1	24	92	0	82	18	28	16	38	1.91
149540--149603	31	2.1	31	88	5	94	18	6	12	62	1.50

Tables:   1

The End!