Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020168.1 Corchorus olitorius cultivar O-4 contig20201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41296

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52--120
32
2.2
31
82
12
88
18
7
11
62
1.51
5704--5747
23
2.0
23
82
13
56
47
2
27
22
1.63
15001--15147
72
2.0
72
98
0
285
39
7
4
48
1.50
15626--15660
16
2.2
16
94
0
61
40
40
14
5
1.69
16359--16403
22
2.0
22
87
8
65
64
2
8
24
1.34
16371--16403
8
4.4
8
85
14
52
63
0
12
24
1.28
16500--16561
31
2.0
31
90
0
97
41
4
22
30
1.74
20381--20534
71
2.2
69
91
5
263
29
14
20
35
1.93
36885--36943
29
2.0
29
96
0
109
20
27
18
33
1.96
36959--37266
153
2.0
153
95
1
555
24
25
16
32
1.96
37906--37936
11
2.8
11
95
0
53
29
0
3
67
1.06

Tables:   1

The End!