Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020173.1 Corchorus olitorius cultivar O-4 contig20206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63836

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8682--8768
41
2.1
41
89
4
131
45
26
25
2
1.65
13494--13754
106
2.5
104
89
2
380
41
8
8
42
1.65
14574--14732
31
5.3
29
68
17
110
25
20
19
33
1.96
14602--14703
29
3.4
29
73
15
109
27
20
19
32
1.97
14574--14732
60
2.7
60
90
7
268
25
20
19
33
1.96
15508--15555
21
2.3
21
85
0
60
27
12
16
43
1.84
16314--16340
13
2.1
13
100
0
54
44
7
7
40
1.60
16823--16868
20
2.3
20
92
0
74
32
10
13
43
1.78
17970--18070
31
3.3
31
74
10
100
32
21
10
34
1.88
18886--18986
31
3.3
31
76
5
107
34
10
21
32
1.88
20029--20060
3
11.0
3
93
6
57
34
0
0
65
0.93
32215--32241
13
2.1
13
100
0
54
22
7
40
29
1.81
37721--37762
22
2.0
20
86
9
57
52
28
0
19
1.46
38797--38844
25
1.9
25
95
0
87
12
31
20
35
1.90
39521--39554
16
2.1
17
88
5
52
44
2
5
47
1.42
41199--41230
16
2.0
16
100
0
64
56
18
0
25
1.42
42854--42902
25
2.0
25
95
0
89
16
32
18
32
1.93
45076--45110
18
1.9
18
94
0
61
11
31
2
54
1.51
45333--45650
159
2.0
159
86
4
448
28
13
15
42
1.85
47668--47841
78
2.2
77
84
4
215
33
10
4
51
1.56
49025--49057
17
1.9
17
88
11
50
60
0
0
39
0.97
54432--54715
154
1.8
155
85
3
403
26
15
16
41
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55218--55300
30
3.0
27
84
10
121
42
3
3
50
1.37
58386--58469
6
14.2
6
92
7
145
50
15
0
34
1.45

Tables:   1

The End!