Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020175.1 Corchorus olitorius cultivar O-4 contig20208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55771

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154--202
22
2.2
22
89
7
73
10
40
34
14
1.79
231--259
14
2.1
14
93
6
51
0
6
13
79
0.93
1764--1938
22
7.9
23
71
16
113
35
9
18
37
1.82
1836--1959
46
2.8
45
74
16
114
37
8
17
36
1.81
1810--1960
68
2.3
65
81
5
169
36
9
17
37
1.82
1997--2388
22
17.7
21
67
15
125
39
10
17
33
1.83
1997--2969
44
22.6
43
66
17
271
37
10
16
34
1.84
2312--2373
23
2.7
23
80
7
65
46
9
19
24
1.79
2494--2611
22
5.6
22
70
18
67
41
10
11
37
1.74
2556--3061
22
23.2
21
69
14
208
39
11
16
33
1.84
2556--2969
22
19.0
22
73
7
227
37
11
17
34
1.85
2942--2988
20
2.2
22
85
7
62
53
4
14
27
1.60
5257--5316
15
3.9
15
72
8
50
35
55
1
8
1.40
6346--6538
8
24.5
8
65
17
75
61
1
12
24
1.38
6455--6539
4
21.8
4
67
13
52
65
0
7
27
1.18
6428--6553
19
7.0
18
68
26
63
61
0
8
28
1.31
6431--6560
47
2.9
47
88
6
182
64
0
7
26
1.26
6478--6539
28
2.2
28
86
8
83
66
0
6
27
1.16
6429--6541
15
7.4
15
68
12
70
63
0
7
27
1.28
6473--6555
15
4.9
18
68
20
63
63
0
7
28
1.20
7777--7823
24
1.9
25
82
4
60
21
27
6
44
1.76
8121--9148
54
19.0
53
81
8
913
31
21
17
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9114--9747
37
17.4
37
87
7
845
44
17
12
25
1.84
9114--9760
35
17.8
36
87
6
819
43
17
12
25
1.85
9731--9984
54
4.7
54
79
7
180
33
22
16
28
1.95
9797--10001
54
3.8
54
86
2
268
34
20
14
30
1.93
10988--11021
11
3.2
11
83
8
52
0
11
0
88
0.52
11078--11159
39
2.1
39
83
2
101
36
13
13
36
1.84
11338--11383
21
2.2
22
88
7
69
8
19
2
69
1.25
11753--11859
55
1.9
55
100
0
214
36
15
10
37
1.82
14469--14669
8
25.1
8
66
15
67
60
0
13
25
1.40
14610--14670
27
2.3
27
88
5
88
65
0
6
27
1.17
14507--14669
19
9.1
18
71
17
65
61
0
12
25
1.35
14563--14691
46
2.9
46
89
5
187
64
0
7
27
1.26
14561--14686
19
7.1
18
67
20
59
62
0
7
28
1.28
22022--22119
46
2.2
46
96
1
180
25
17
16
40
1.90
25204--25238
3
11.7
3
100
0
70
34
0
0
65
0.93
25352--25404
22
2.4
22
100
0
106
24
20
18
35
1.95
34181--34217
19
1.9
19
94
0
65
29
10
2
56
1.47
34440--34473
17
2.1
16
94
5
59
35
0
11
52
1.38
37066--37116
17
3.0
17
80
8
59
52
19
1
25
1.56
52857--52906
11
4.8
11
73
14
52
28
22
14
36
1.92
52827--52904
30
2.6
28
88
6
102
28
23
11
37
1.89
54331--54360
15
2.1
15
93
6
53
63
6
16
13
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54718--54767
21
2.4
21
79
0
55
12
20
48
20
1.80

Tables:   1

The End!