Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020176.1 Corchorus olitorius cultivar O-4 contig20209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62091

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3751--3799
21
2.3
21
82
6
55
40
16
28
14
1.87
8655--8681
4
6.8
4
100
0
54
51
0
0
48
1.00
28929--28977
26
1.9
26
83
4
64
55
4
2
38
1.31
28927--28983
26
2.2
26
78
3
62
50
3
1
43
1.29
30120--30145
13
2.0
13
100
0
52
38
15
23
23
1.92
32226--32261
19
1.9
18
88
5
54
30
2
0
66
1.06
34890--35156
134
2.0
131
90
2
417
50
1
8
38
1.45
35444--35502
23
2.4
25
72
8
59
40
10
1
47
1.47
42363--42392
2
15.0
2
100
0
60
50
0
0
50
1.00
42528--42553
13
2.0
13
100
0
52
38
7
0
53
1.30
49231--49658
212
2.0
212
100
0
856
32
28
15
23
1.95
53023--53057
18
1.9
18
100
0
70
37
11
22
28
1.89
55974--55999
3
8.7
3
100
0
52
0
30
0
69
0.89
55981--56026
15
3.1
15
83
0
56
0
26
0
73
0.83
60928--61008
39
2.0
40
92
2
137
50
8
3
37
1.51
60999--61045
25
1.9
25
87
12
71
29
6
8
55
1.55
61123--61516
203
1.9
203
93
2
684
35
10
8
44
1.70

Tables:   1

The End!