Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020177.1 Corchorus olitorius cultivar O-4 contig20210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43054

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4883--4924
22
1.9
22
90
0
66
16
21
23
38
1.93
5254--5301
6
8.3
6
78
17
57
20
33
31
14
1.93
5398--5458
6
10.2
6
77
7
61
19
29
27
22
1.98
5398--5458
24
2.5
24
74
10
79
19
29
27
22
1.98
8092--8122
2
15.5
2
100
0
62
48
0
0
51
1.00
8289--8332
16
2.8
15
80
10
52
45
2
18
34
1.62
9493--9545
26
1.9
27
85
11
72
50
24
11
13
1.73
9906--10053
74
2.0
74
98
0
287
29
17
18
35
1.94
11939--11985
24
2.0
24
95
0
85
36
29
4
29
1.77
14283--14340
12
4.8
12
91
4
98
31
24
8
36
1.85
14283--14340
25
2.4
24
94
2
98
31
24
8
36
1.85
19633--19687
25
2.5
20
72
25
56
12
14
20
52
1.73
22754--22814
31
2.0
31
96
0
113
40
9
8
40
1.68
24707--24982
138
2.0
138
88
0
408
25
23
18
32
1.97
25192--25230
15
2.6
15
91
0
60
15
12
38
33
1.85
40498--40559
31
2.0
31
83
0
79
29
17
6
46
1.73
40722--41045
159
2.0
160
88
8
474
25
14
6
53
1.64

Tables:   1

The End!