Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020178.1 Corchorus olitorius cultivar O-4 contig20211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80533

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2139--2207
35
2.0
35
88
0
102
27
13
5
53
1.62
10850--10898
18
2.7
18
84
6
55
67
2
28
2
1.13
10843--10913
24
3.0
23
76
13
65
70
1
26
1
1.04
21728--21771
21
2.1
21
83
8
54
52
6
0
40
1.28
22987--23038
13
3.4
17
68
26
53
46
13
3
36
1.62
28088--28141
3
18.0
3
100
0
108
66
0
0
33
0.92
28329--28409
32
2.6
32
94
2
146
54
22
2
20
1.57
41890--41915
2
13.0
2
100
0
52
50
0
0
50
1.00
45762--45815
4
13.5
4
100
0
108
75
0
24
0
0.80
62217--62330
56
2.0
56
94
3
203
33
24
2
39
1.69
62431--62468
16
2.4
16
100
0
76
39
5
23
31
1.77
62973--63053
42
1.9
42
97
0
153
29
7
16
46
1.73
63775--63878
3
34.7
3
96
0
190
32
1
0
65
1.04
69726--69794
29
2.4
30
83
9
90
24
23
10
42
1.85
70437--70655
53
4.2
53
81
5
257
39
11
18
29
1.87
79377--79427
22
2.2
24
83
16
72
41
0
0
58
0.98
79377--79425
25
2.0
25
84
8
64
40
0
0
59
0.98

Tables:   1

The End!