Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020182.1 Corchorus olitorius cultivar O-4 contig20215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2660
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35


Found at i:191 original size:25 final size:24

Alignment explanation


    Indices: 157--203  Score: 85
    Period size: 25  Copynumber: 1.9  Consensus size: 24

        147 ACGTTTGCAC

                                     
        157 AAATACCTAAGAATTTGAATTAAAA
          1 AAATACCTAAGAATTT-AATTAAAA

                                  
        182 AAATACCTAAGAATTTAATTAA
          1 AAATACCTAAGAATTTAATTAA

        204 TGTAAGTATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    6  0.27
  25   16  0.73

ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30


Consensus pattern (24 bp):   
AAATACCTAAGAATTTAATTAAAA
Done.