Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020185.1 Corchorus olitorius cultivar O-4 contig20218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65811
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:249 original size:56 final size:57
Alignment explanation
Indices: 163--277 Score: 214
Period size: 56 Copynumber: 2.0 Consensus size: 57
153 TATCCGTTTC
*
163 CTTTCACACAATAAATGTTATAATAAATCCTATCC-CCCTATCTCTACTTAATTATT
1 CTTTCACACAACAAATGTTATAATAAATCCTATCCTCCCTATCTCTACTTAATTATT
219 CTTTCACACAACAAATGTTATAATAAATCCTATCCTCCCTATCTCTACTTAATTATT
1 CTTTCACACAACAAATGTTATAATAAATCCTATCCTCCCTATCTCTACTTAATTATT
276 CT
1 CT
278 ACAAAATAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 34 0.60
57 23 0.40
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.39
Consensus pattern (57 bp):
CTTTCACACAACAAATGTTATAATAAATCCTATCCTCCCTATCTCTACTTAATTATT
Found at i:402 original size:42 final size:42
Alignment explanation
Indices: 343--423 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
333 TAAGGATCAG
* *
343 GATTTGAGTTGAGTATTTTTTAATTTACAAAGAATTTTCTAT
1 GATTTGAATTGAGTATTTCTTAATTTACAAAGAATTTTCTAT
*
385 GATTTGAATTGAGTATTTCTTAATTTACAGAGAATTTTC
1 GATTTGAATTGAGTATTTCTTAATTTACAAAGAATTTTC
424 AAGACTTAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (42 bp):
GATTTGAATTGAGTATTTCTTAATTTACAAAGAATTTTCTAT
Found at i:3673 original size:13 final size:14
Alignment explanation
Indices: 3648--3678 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
3638 AAGTTTATTG
3648 ATAATATATATAAT
1 ATAATATATATAAT
3662 ATAATA-ATATAAT
1 ATAATATATATAAT
3675 ATAA
1 ATAA
3679 CACAAGCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAATATATATAAT
Found at i:3931 original size:42 final size:43
Alignment explanation
Indices: 3880--3973 Score: 129
Period size: 45 Copynumber: 2.2 Consensus size: 43
3870 AGTGCATTAC
**
3880 CTAA-ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAG
1 CTAATATTCTACCTCCATCTCTAAATAATTCATCAAAATAAAG
*
3921 CTAATATTCTACTCCTCCATCTCTAAATAATTCATCAAAATAAAT
1 CTAATATTCTA--CCTCCATCTCTAAATAATTCATCAAAATAAAG
3966 CTAATATT
1 CTAATATT
3974 AATTATTGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
41 4 0.09
42 6 0.13
45 36 0.78
ACGTcount: A:0.39, C:0.22, G:0.03, T:0.35
Consensus pattern (43 bp):
CTAATATTCTACCTCCATCTCTAAATAATTCATCAAAATAAAG
Found at i:5673 original size:31 final size:31
Alignment explanation
Indices: 5638--5709 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
5628 TAAATTATTG
*
5638 CAAATTAAAACAAAT-TAAG-CATTAAATTAAA
1 CAAATTAAAA-AAATGAAAGTC-TTAAATTAAA
*
5669 CAAA-TAATTAAAATGAAAGTCTTAAATTAAA
1 CAAATTAA-AAAAATGAAAGTCTTAAATTAAA
5700 CAAATTAAAA
1 CAAATTAAAA
5710 GTTGATATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
30 7 0.21
31 23 0.68
32 4 0.12
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.26
Consensus pattern (31 bp):
CAAATTAAAAAAATGAAAGTCTTAAATTAAA
Found at i:12400 original size:27 final size:28
Alignment explanation
Indices: 12370--12429 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 28
12360 TGAAATGAAG
12370 ATAAAAGTGCAAAAAAACTCCGTCGGC-
1 ATAAAAGTGCAAAAAAACTCCGTCGGCA
*
12397 ATAAAAGTGCAAAAACACTCCGTCGGCA
1 ATAAAAGTGCAAAAAAACTCCGTCGGCA
12425 ATAAA
1 ATAAA
12430 GGAAAAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.47, C:0.22, G:0.17, T:0.15
Consensus pattern (28 bp):
ATAAAAGTGCAAAAAAACTCCGTCGGCA
Found at i:18613 original size:14 final size:13
Alignment explanation
Indices: 18595--18627 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
18585 TCCTTGAGTG
18595 TTTTTATTTATTT
1 TTTTTATTTATTT
18608 TATTTTATTTATTT
1 T-TTTTATTTATTT
18622 TTTTTA
1 TTTTTA
18628 CAGTTAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTATTTATTT
Found at i:20925 original size:17 final size:16
Alignment explanation
Indices: 20903--20955 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
20893 CCATGAAAAA
20903 TTATTAATTTAGAGAGG
1 TTATTAATTTAG-GAGG
*
20920 TTATTAATTTATCG-GG
1 TTATTAATTTA-GGAGG
20936 -TATTAATTTATGGAGG
1 TTATTAATTTA-GGAGG
20952 TTAT
1 TTAT
20956 ATTGTATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 12 0.39
16 4 0.13
17 15 0.48
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (16 bp):
TTATTAATTTAGGAGG
Found at i:20942 original size:76 final size:76
Alignment explanation
Indices: 20799--20946 Score: 242
Period size: 76 Copynumber: 1.9 Consensus size: 76
20789 AAACCTCTAT
* * *
20799 AAATTAATAATGTTGGGATCATGAATAATTACTAATTTAGAGAGGTTATTAATTTATCGAATGTT
1 AAATTAATAATGTTGGGACCATGAAAAATTACTAATTTAGAGAGGTTATTAATTTATCGAATATT
20864 AATTTATATGG
66 AATTTATATGG
* **
20875 AAATTAATAATGTTGGGACCATGAAAAATTATTAATTTAGAGAGGTTATTAATTTATCGGGTATT
1 AAATTAATAATGTTGGGACCATGAAAAATTACTAATTTAGAGAGGTTATTAATTTATCGAATATT
20940 AATTTAT
66 AATTTAT
20947 GGAGGTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 66 1.00
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.41
Consensus pattern (76 bp):
AAATTAATAATGTTGGGACCATGAAAAATTACTAATTTAGAGAGGTTATTAATTTATCGAATATT
AATTTATATGG
Found at i:22561 original size:56 final size:55
Alignment explanation
Indices: 22471--22577 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 55
22461 GAAAAACTTT
* * *
22471 CATTGGACTTTCGCTTATGACATTTTTGGGCTTAAAGATA-CCCTACCAATATGTTC
1 CATTGGACTTTCACTTAGGACATTTTTGGACTTAAA-ATAGCCC-ACCAATATGTTC
22527 CATTGGACTTTCACTTACGGA-ATTTTTGGACTTAAAATAGCCCACCAATAT
1 CATTGGACTTTCACTTA-GGACATTTTTGGACTTAAAATAGCCCACCAATAT
22578 CAATAAGTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
55 11 0.24
56 33 0.72
57 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (55 bp):
CATTGGACTTTCACTTAGGACATTTTTGGACTTAAAATAGCCCACCAATATGTTC
Found at i:25157 original size:178 final size:178
Alignment explanation
Indices: 24787--25164 Score: 476
Period size: 178 Copynumber: 2.1 Consensus size: 178
24777 TTCCACCATA
* * * * *
24787 AGCACAAATTATGTAATATTAAGTAGACCGTCTATTTCCGTTAACTGAAATAACTAATTCTTTGG
1 AGCAAAAATTATATAATATTAAGTAGACCGTCTATTTCCGTTAACCGAAACAACAAATTCTTTGG
* * *
24852 AAGCATTTTTTATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCGTGAAAGTAGTAGATCAT
66 AAGCATTTTTGATACCATGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTAGTAGATCAT
** * * * *
24917 TTAACAACCTTTCAAGAGACACTTGAATCATCTCAATCAGACATCTGG
131 GGAACAACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAACCGG
* *
24965 AGCAAAAGTTATATAATATTAAGTGGACCGTCTA-TTCTCGTTAACCGAAACAACAAATT-TTTC
1 AGCAAAAATTATATAATATTAAGTAGACCGTCTATTTC-CGTTAACCGAAACAACAAATTCTTT-
* *
25028 GGAAGCATTTTTGATA-CATGAAACATTAAATTTAGTTTTCGAGTCCTTCATGAAAGTTGTAGAT
64 GGAAGCATTTTTGATACCATG-AACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTAGTAGAT
* * * * *
25092 CATGGAACAATCTTTTAATAGACACTTAAATCACCTTAATCAGATAACCGG
128 CATGGAACAACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAACCGG
*
25143 AG-AGAAAATTATATAATGTTAA
1 AGCA-AAAATTATATAATATTAA
25165 ACAGACTATT
Statistics
Matches: 171, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
177 10 0.06
178 161 0.94
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (178 bp):
AGCAAAAATTATATAATATTAAGTAGACCGTCTATTTCCGTTAACCGAAACAACAAATTCTTTGG
AAGCATTTTTGATACCATGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTAGTAGATCAT
GGAACAACCTTTCAAGAGACACTTAAATCACCTCAATCAGACAACCGG
Found at i:29256 original size:15 final size:15
Alignment explanation
Indices: 29236--29266 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
29226 TGTCTCTGTT
29236 TTACACCCTGTTTGC
1 TTACACCCTGTTTGC
29251 TTACACCCTGTTTGC
1 TTACACCCTGTTTGC
29266 T
1 T
29267 CAAATCTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.32, G:0.13, T:0.42
Consensus pattern (15 bp):
TTACACCCTGTTTGC
Found at i:29708 original size:29 final size:29
Alignment explanation
Indices: 29666--29724 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
29656 CATCTGTTGA
* *
29666 CTGTTGACTGAGTCAACCTGCCACGTCAT
1 CTGTTGACCGAGTCAACCTGCCACATCAT
29695 CTGTTGACCGAGTCAACCTGCCACATCAT
1 CTGTTGACCGAGTCAACCTGCCACATCAT
29724 C
1 C
29725 CAGTTGACTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.25
Consensus pattern (29 bp):
CTGTTGACCGAGTCAACCTGCCACATCAT
Found at i:29929 original size:47 final size:46
Alignment explanation
Indices: 29862--30005 Score: 227
Period size: 47 Copynumber: 3.1 Consensus size: 46
29852 TATTCCGCTT
*
29862 TGTTTGACC-TTGGTCCTGTTTTCTGCCTGTTTGACCTTTTGGTCA
1 TGTTTGACCTTTGGTCCTGTTTTCTGCCTGTTTGACCTTTTGGTCC
*
29907 TGTTTGACCATTTGGTCCTGTTTTCTGCCTGTTTGACCTCTTGGTCC
1 TGTTTGACC-TTTGGTCCTGTTTTCTGCCTGTTTGACCTTTTGGTCC
* *
29954 TGTTTGACCTTTTGGTCCTGTTTTCTGCCTGATTGACCTTTCGGTCC
1 TGTTTGACC-TTTGGTCCTGTTTTCTGCCTGTTTGACCTTTTGGTCC
30001 TGTTT
1 TGTTT
30006 TTAGCCCTTG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 9 0.10
47 82 0.90
ACGTcount: A:0.06, C:0.24, G:0.22, T:0.49
Consensus pattern (46 bp):
TGTTTGACCTTTGGTCCTGTTTTCTGCCTGTTTGACCTTTTGGTCC
Found at i:29957 original size:18 final size:18
Alignment explanation
Indices: 29887--29976 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
29877 CTGTTTTCTG
*
29887 CCTGTTTGACCTTTTGGT
1 CCTGTTTGACCTCTTGGT
*
29905 CATGTTTGACCAT-TTGGT
1 CCTGTTTGACC-TCTTGGT
29923 CCTGTTT----TC-T-G-
1 CCTGTTTGACCTCTTGGT
29934 CCTGTTTGACCTCTTGGT
1 CCTGTTTGACCTCTTGGT
*
29952 CCTGTTTGACCTTTTGGT
1 CCTGTTTGACCTCTTGGT
29970 CCTGTTT
1 CCTGTTT
29977 TCTGCCTGAT
Statistics
Matches: 60, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
11 7 0.12
12 1 0.02
13 2 0.03
15 2 0.03
16 1 0.02
17 1 0.02
18 45 0.75
19 1 0.02
ACGTcount: A:0.07, C:0.23, G:0.21, T:0.49
Consensus pattern (18 bp):
CCTGTTTGACCTCTTGGT
Found at i:33460 original size:24 final size:24
Alignment explanation
Indices: 33433--33500 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 24
33423 TAGCTGCATT
33433 TAAACGCCGCTATATAGAGGTGTC
1 TAAACGCCGCTATATAGAGGTGTC
*
33457 TAAACGCCGCAACGTAATATAGAGGTGTT
1 TAAACGCCG---C-T-ATATAGAGGTGTC
33486 TAAACGCCGCTATAT
1 TAAACGCCGCTATAT
33501 TTAATTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
24 13 0.34
25 1 0.03
26 1 0.03
27 1 0.03
28 1 0.03
29 21 0.55
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAACGCCGCTATATAGAGGTGTC
Found at i:37726 original size:4 final size:4
Alignment explanation
Indices: 37717--37760 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
37707 CTCCATATTT
*
37717 TTTG TTTG TTTG TTTG -TT- TTTG TTTG TTTG TTTG ATT- TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
37761 TATTTTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 6 0.17
4 29 0.83
ACGTcount: A:0.02, C:0.00, G:0.20, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:37738 original size:18 final size:19
Alignment explanation
Indices: 37715--37760 Score: 85
Period size: 18 Copynumber: 2.5 Consensus size: 19
37705 GCCTCCATAT
37715 TTTTTGTTTGTTTGTTTG-
1 TTTTTGTTTGTTTGTTTGA
37733 TTTTTGTTTGTTTGTTTGA
1 TTTTTGTTTGTTTGTTTGA
37752 TTTTTGTTT
1 TTTTTGTTT
37761 TATTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.02, C:0.00, G:0.20, T:0.78
Consensus pattern (19 bp):
TTTTTGTTTGTTTGTTTGA
Found at i:37740 original size:14 final size:14
Alignment explanation
Indices: 37721--37749 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37711 ATATTTTTTG
37721 TTTGTTTGTTTGTT
1 TTTGTTTGTTTGTT
37735 TTTGTTTGTTTGTT
1 TTTGTTTGTTTGTT
37749 T
1 T
37750 GATTTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (14 bp):
TTTGTTTGTTTGTT
Found at i:45455 original size:1 final size:1
Alignment explanation
Indices: 45451--45484 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
45441 AGCTTGGGGG
45451 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
45485 CCGTAGCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:50618 original size:16 final size:16
Alignment explanation
Indices: 50597--50630 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50587 AGACAAGCTG
50597 TCCTTTATCTACACTT
1 TCCTTTATCTACACTT
*
50613 TCCTTTATGTACACTT
1 TCCTTTATCTACACTT
50629 TC
1 TC
50631 ATGTTCACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.29, G:0.03, T:0.50
Consensus pattern (16 bp):
TCCTTTATCTACACTT
Found at i:52785 original size:68 final size:68
Alignment explanation
Indices: 52673--52808 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
52663 CTTTAAAGAT
* *
52673 TAGGATACACTCTTATTCCTCAAATCCATGATCCTTAATAATTCTTGATCGACCGACTAAGAACA
1 TAGGATACACTCTTATTCCTCAAATCCACGATCCTGAATAATTCTTGATCGACCGACTAAGAACA
52738 AAA
66 AAA
* *
52741 TAGGATACACTCTTATTCCTCAAATCCACGATCCTGAATGATTCTTGATCGACGGACTAAGAACA
1 TAGGATACACTCTTATTCCTCAAATCCACGATCCTGAATAATTCTTGATCGACCGACTAAGAACA
52806 AAA
66 AAA
52809 GATACGAAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (68 bp):
TAGGATACACTCTTATTCCTCAAATCCACGATCCTGAATAATTCTTGATCGACCGACTAAGAACA
AAA
Found at i:60194 original size:2 final size:2
Alignment explanation
Indices: 60189--60216 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
60179 TTTTTTTGAC
60189 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60217 GTAAGTTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61149 original size:17 final size:16
Alignment explanation
Indices: 61109--61157 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
61099 CATGTAATCT
*
61109 TTGATCACCGGTGATC
1 TTGATCACTGGTGATC
61125 TTGCATCACTGGTGATC
1 TTG-ATCACTGGTGATC
*
61142 TTAGATCACTAGTGAT
1 TT-GATCACTGGTGAT
61158 TTGGGGGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 3 0.10
17 25 0.86
18 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (16 bp):
TTGATCACTGGTGATC
Found at i:64626 original size:5 final size:5
Alignment explanation
Indices: 64613--64642 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
64603 AGAGAGAATT
*
64613 GAAAG GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
64643 AGATGTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Done.