Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020187.1 Corchorus olitorius cultivar O-4 contig20220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8809
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:2048 original size:29 final size:30

Alignment explanation


    Indices: 2009--2069  Score: 88
    Period size: 29  Copynumber: 2.1  Consensus size: 30

       1999 TATAAATAAT

                  *                 *     
       2009 ATAATATAATTAAATAA-TTATATTTATAC
          1 ATAATAAAATTAAATAATTTATATGTATAC

                       *                  
       2038 ATAATAAAATTGAATAATTTATATGTATAC
          1 ATAATAAAATTAAATAATTTATATGTATAC

              
       2068 AT
          1 AT

       2070 TAATTAGAAC


Statistics
Matches: 28,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  29   15  0.54
  30   13  0.46

ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43


Consensus pattern (30 bp):   
ATAATAAAATTAAATAATTTATATGTATAC
Done.