Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020188.1 Corchorus olitorius cultivar O-4 contig20221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22889
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--45  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

                                                                          
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT -T
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
         41 AT AT A
          1 AT AT A

         46 ATAATAAAAT


Statistics
Matches: 41,  Mismatches: 0, Indels: 4
        0.91            0.00        0.09

Matches are distributed among these distances:
   1    2  0.05
   2   39  0.95

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
AT

Found at i:9960 original size:25 final size:25

Alignment explanation


    Indices: 9926--9973  Score: 78
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       9916 CAAAACTTGA

                      *      *       
       9926 CATCTCGATTGAGTTTGTTTCTTCC
          1 CATCTCGATTAAGTTTGCTTCTTCC

                                   
       9951 CATCTCGATTAAGTTTGCTTCTT
          1 CATCTCGATTAAGTTTGCTTCTT

       9974 TCAACTCAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.15, C:0.23, G:0.15, T:0.48


Consensus pattern (25 bp):   
CATCTCGATTAAGTTTGCTTCTTCC
Done.