Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020190.1 Corchorus olitorius cultivar O-4 contig20223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30


Found at i:813 original size:22 final size:21

Alignment explanation


    Indices: 779--823  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 21

        769 CTAAGATGCA

                    *             
        779 TAAAAAAATAAATCTT-AAATC
          1 TAAAAAAAGAAAT-TTAAAATC

                                  
        800 TAAAAACAAGAAATTTAAAATC
          1 TAAAAA-AAGAAATTTAAAATC

              
        822 TA
          1 TA

        824 GACCTAAATT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  21    8  0.38
  22   13  0.62

ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27


Consensus pattern (21 bp):   
TAAAAAAAGAAATTTAAAATC
Done.