Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020192.1 Corchorus olitorius cultivar O-4 contig20225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1829
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32


Found at i:251 original size:41 final size:41

Alignment explanation


    Indices: 172--251  Score: 101
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        162 TCAAGGTCTA

                           *             *   *       
        172 AAATTGAATCAATTAGCAAATAAACATTCCAATTAGGGATT
          1 AAATTGAATCAATTAACAAATAAACATTCAAATCAGGGATT

                                                     
        213 AAATTGAATCAATTAACGAACATAAAC-TT-AAATCAGGGA
          1 AAATTGAATCAATTAAC-AA-ATAAACATTCAAATCAGGGA

        252 CTAAGGTGAA


Statistics
Matches: 34,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
  41   24  0.71
  42    4  0.12
  43    6  0.18

ACGTcount: A:0.49, C:0.12, G:0.12, T:0.26


Consensus pattern (41 bp):   
AAATTGAATCAATTAACAAATAAACATTCAAATCAGGGATT
Done.