Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020194.1 Corchorus olitorius cultivar O-4 contig20227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6700

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
221--284
28
2.3
28
81
2
76
42
14
21
21
1.88
1039--1138
35
2.9
35
88
7
141
19
10
29
42
1.83
1737--1793
28
2.0
28
82
0
69
35
15
14
35
1.88
1868--1946
12
6.7
12
80
7
81
0
25
0
74
0.82
1868--1918
18
2.8
18
77
11
59
0
25
0
74
0.82
1849--1944
36
2.7
33
82
12
95
3
22
0
73
0.97
1887--1928
6
7.2
6
91
2
50
0
26
0
73
0.83
3140--3178
20
2.0
20
94
0
69
41
28
2
28
1.69
4742--4779
18
2.1
19
95
5
69
42
15
0
42
1.47

Tables:   1

The End!