Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020196.1 Corchorus olitorius cultivar O-4 contig20229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2460
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Found at i:1946 original size:31 final size:31

Alignment explanation


    Indices: 1911--1972  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1901 CACAAGAGAA

                             * *           
       1911 CTCTTGATTCATGAATATTTACAATATTCAT
          1 CTCTTGATTCATGAATAATCACAATATTCAT

                                           
       1942 CTCTTGATTCATGAATAATCACAATATTCAT
          1 CTCTTGATTCATGAATAATCACAATATTCAT

       1973 TAATAATTTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42


Consensus pattern (31 bp):   
CTCTTGATTCATGAATAATCACAATATTCAT
Done.