genome.fa.s20198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020198.1 Corchorus olitorius cultivar O-4 contig20231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48486

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--268	51	5.0	51	74	12	218	36	20	26	16	1.93
136--331	40	4.7	42	80	10	179	35	20	27	15	1.94
183--349	40	4.1	41	79	11	168	37	20	27	13	1.91
7999--8025	13	2.1	13	100	0	54	44	14	0	40	1.46
18262--18298	18	2.1	18	100	0	74	48	5	18	27	1.70
18734--19087	105	3.3	105	90	2	523	28	18	21	31	1.96
18997--19182	105	1.8	99	85	10	252	28	16	22	32	1.96
21472--21510	20	2.0	20	85	10	53	28	5	2	64	1.28
21676--22338	22	29.9	22	68	18	190	39	8	16	35	1.79
21673--22064	66	5.9	67	73	14	251	37	7	18	36	1.80
21898--21945	12	4.0	12	94	0	87	43	8	22	25	1.81
21896--21954	12	5.3	10	83	15	55	47	8	20	23	1.77
22393--22884	22	22.7	22	69	13	191	37	9	17	36	1.81
22594--22654	23	2.7	23	87	2	79	32	3	22	40	1.70
22848--22892	22	2.1	22	92	8	76	55	2	15	26	1.52
24550--24602	2	26.5	2	88	7	81	3	47	0	49	1.19
25000--25052	12	4.5	12	81	11	65	77	13	5	3	1.09
26236--26264	2	14.5	2	100	0	58	51	0	0	48	1.00
28547--28592	25	1.9	24	86	8	67	23	8	21	45	1.80
30357--30485	64	2.0	64	95	0	231	47	14	11	26	1.79
30468--31211	219	3.5	216	79	11	816	34	6	22	35	1.81
30732--31134	195	2.1	197	89	0	621	36	6	20	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31693--32424	219	3.3	219	90	2	1132	35	21	7	35	1.82
32316--32524	103	2.1	101	89	2	321	34	25	6	33	1.81
32100--32741	317	2.0	319	93	2	1112	35	22	7	35	1.82
32420--32883	222	2.1	214	86	5	619	36	20	7	35	1.81
36028--36090	25	2.5	25	87	7	83	34	7	4	52	1.52
36401--36606	41	5.0	41	84	4	234	29	13	18	38	1.89
36447--36603	81	1.9	81	88	2	235	29	13	17	39	1.88
37363--37493	63	2.1	63	89	0	199	16	21	16	45	1.85
39219--39462	41	5.9	41	82	4	276	30	13	19	36	1.90
39558--39608	16	3.2	16	97	0	93	11	27	15	45	1.81
43583--43733	60	2.5	61	84	3	189	21	17	17	43	1.88
44587--44644	22	2.6	22	86	5	73	37	6	12	43	1.69
44661--44808	59	2.5	59	82	6	176	23	16	16	43	1.87
46452--46480	14	2.1	14	100	0	58	37	41	13	6	1.72
48184--48303	16	7.6	16	87	8	174	6	14	39	40	1.72
48296--48342	17	2.8	17	90	0	67	2	19	51	27	1.58

Tables:   1

The End!