Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020199.1 Corchorus olitorius cultivar O-4 contig20232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11055

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283--354
31
2.3
31
75
17
78
59
8
5
26
1.48
811--848
17
2.2
17
90
0
58
2
21
52
23
1.59
852--894
16
2.7
16
78
7
52
11
16
39
32
1.84
5021--5072
22
2.4
22
83
3
70
42
7
11
38
1.70
5178--5669
22
22.5
22
71
9
202
37
9
16
36
1.82
5344--5439
23
4.0
23
79
11
86
35
8
19
36
1.82
5366--5439
23
3.0
24
81
14
89
35
6
20
37
1.79
5112--5739
22
28.9
22
68
14
155
37
9
16
36
1.81
5707--5754
22
2.2
22
88
0
69
50
10
10
29
1.70
9513--9570
22
2.6
22
77
0
62
41
3
13
41
1.62
10425--10878
177
2.6
178
79
4
479
35
15
15
32
1.90
10944--10970
12
2.2
12
100
0
54
44
0
0
55
0.99

Tables:   1

The End!