Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020201.1 Corchorus olitorius cultivar O-4 contig20234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33912

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
255--325
37
1.9
37
88
0
106
40
8
15
35
1.78
2714--2782
35
2.0
35
100
0
138
36
8
8
46
1.66
3770--3847
40
2.0
40
100
0
156
21
25
12
39
1.89
6554--6612
15
4.1
15
80
12
79
32
15
0
52
1.43
6562--6605
9
4.9
9
77
0
52
31
13
0
54
1.39
6556--6612
21
2.7
21
88
0
78
31
15
0
52
1.43
6556--6599
6
7.8
6
85
14
67
31
13
0
54
1.39
8848--9057
22
9.6
22
72
11
103
40
10
13
35
1.80
8863--8986
65
1.9
66
81
5
153
40
13
12
33
1.83
8906--9057
44
3.5
44
77
15
138
42
10
12
34
1.77
10223--10298
38
2.0
38
92
0
125
40
0
11
47
1.40
10902--11095
22
8.8
21
75
11
151
40
15
6
37
1.74
10902--11026
65
1.9
65
83
6
164
41
13
8
36
1.74
10902--11095
45
4.4
42
85
7
178
40
15
6
37
1.74
10997--11095
45
2.2
45
98
0
189
39
16
5
39
1.70
11627--11689
31
2.0
31
96
0
117
23
20
4
50
1.67
12077--12234
83
1.9
84
89
1
246
37
9
2
50
1.48
15125--15539
160
2.5
158
82
13
507
40
15
15
28
1.88
15756--15790
19
1.9
19
88
11
56
34
0
0
65
0.93
18188--18333
22
6.6
21
73
14
82
40
8
16
34
1.78
18188--18333
66
2.2
66
81
2
168
40
8
16
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18189--18353
44
3.7
43
72
12
120
40
7
16
35
1.77
18358--18641
22
12.7
22
71
12
82
34
10
17
37
1.85
18469--18669
109
1.8
110
80
7
239
32
10
17
38
1.84
28077--28157
39
2.0
40
92
2
137
50
8
3
37
1.51
28148--28194
25
1.9
25
91
4
78
27
6
8
57
1.53
28271--28676
205
2.0
202
96
1
740
36
11
8
44
1.71
29192--29261
36
1.9
36
94
0
122
61
8
8
21
1.52
32509--32543
14
2.5
14
90
0
61
20
8
14
57
1.63
32593--32817
7
32.1
7
96
0
324
23
0
19
57
1.41
32953--33030
33
2.4
33
91
0
120
32
6
17
43
1.75
33134--33400
54
4.8
54
84
8
322
35
22
14
26
1.93
33134--33400
114
2.4
108
86
6
367
35
22
14
26
1.93
33497--33912
37
11.2
37
78
2
379
42
15
18
23
1.88

Tables:   1

The End!