Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020202.1 Corchorus olitorius cultivar O-4 contig20235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78897

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2989--3069
40
2.0
40
97
0
153
32
12
9
45
1.75
4401--4425
13
1.9
13
100
0
50
40
8
12
40
1.72
5503--5544
15
2.7
15
88
3
57
64
14
11
9
1.50
6311--6346
18
1.9
18
88
5
54
63
8
16
11
1.49
10958--10998
20
2.0
20
85
4
55
58
14
9
17
1.62
10979--11035
29
2.0
29
89
6
89
43
10
7
38
1.66
10994--11086
35
2.8
34
80
15
90
44
10
10
34
1.74
11348--11389
15
2.7
15
88
3
57
64
14
11
9
1.50
12156--12191
18
1.9
18
88
5
54
63
8
16
11
1.49
13361--13422
22
2.8
22
78
7
63
35
16
11
37
1.84
13331--13422
22
4.4
20
72
13
62
36
14
10
38
1.81
13527--13606
22
3.6
23
74
17
62
33
18
7
40
1.79
13620--13812
22
8.7
22
68
12
99
38
15
11
34
1.84
15058--15408
119
3.0
118
93
2
598
33
8
23
34
1.85
15578--15627
16
3.1
16
88
8
66
34
4
2
60
1.27
15704--15744
8
4.9
8
87
6
55
24
19
2
53
1.57
15709--15753
13
3.2
13
82
17
63
24
20
2
53
1.57
15714--15744
16
1.9
16
100
0
62
25
19
3
51
1.62
16480--16566
26
3.5
22
76
17
66
35
8
26
29
1.85
16529--16612
13
6.8
13
75
12
79
30
8
27
33
1.86
16529--16618
37
2.4
37
87
7
146
28
8
26
35
1.87
18270--18326
29
2.0
29
82
6
71
28
8
14
49
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31209--31459
132
1.9
132
90
0
403
30
19
19
30
1.97
40672--40798
45
2.8
45
92
0
218
38
24
5
31
1.78
41071--41677
300
2.0
301
97
1
1146
44
14
15
26
1.84
44028--44125
51
1.9
51
81
8
119
22
22
14
40
1.90
45971--46134
82
2.0
82
84
0
211
35
24
12
27
1.92
51308--51496
93
2.0
94
92
1
317
48
3
9
38
1.54
51353--51630
93
3.0
92
81
5
244
48
2
12
35
1.56
51467--51638
90
1.9
90
90
0
272
51
1
14
32
1.53
51787--51818
16
2.0
17
88
11
50
65
15
0
18
1.27
52096--52150
26
2.1
26
86
0
74
47
16
14
21
1.82
52377--52806
214
2.0
214
98
0
824
25
13
14
46
1.81
53753--53833
42
1.9
42
94
0
144
46
14
7
30
1.72
53766--53832
21
3.2
21
66
16
57
50
13
5
29
1.65
53899--54010
55
2.0
55
86
6
156
42
0
22
33
1.60
58097--58426
178
1.9
178
86
5
479
34
16
13
35
1.88
58094--58471
178
2.1
178
82
5
469
36
15
13
34
1.86
59642--59806
77
2.1
79
90
3
262
36
6
13
43
1.70
59723--59853
67
1.9
68
89
3
201
38
5
11
44
1.63
62303--62340
20
2.0
20
94
5
69
0
0
13
86
0.56
62299--62340
7
6.1
7
88
5
68
0
0
14
85
0.59
66007--66039
12
2.6
13
85
9
50
3
24
9
63
1.38
67477--67510
6
5.7
6
100
0
68
29
0
0
70
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72811--73126
128
2.6
119
80
9
352
37
19
19
23
1.94
76898--77285
60
6.4
62
91
2
272
31
18
18
31
1.95
76963--77285
149
2.1
151
90
1
497
30
19
18
30
1.96
76963--77285
30
10.7
30
91
1
486
30
19
18
30
1.96
78623--78684
31
2.0
31
93
0
106
41
6
17
33
1.75

Tables:   1

The End!