Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020203.1 Corchorus olitorius cultivar O-4 contig20236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63549

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980--1154
31
5.7
31
86
0
190
18
21
25
34
1.96
3787--3916
64
2.0
64
100
0
260
40
10
25
24
1.86
14967--15038
22
3.5
20
79
18
78
43
11
4
41
1.59
15087--15136
22
2.3
22
86
13
68
34
16
2
48
1.57
15087--15136
21
2.3
21
86
10
66
34
16
2
48
1.57
15130--15431
22
13.8
22
66
14
97
38
15
9
36
1.80
15171--15277
46
2.4
45
85
3
144
36
14
14
34
1.87
15695--15768
22
3.5
22
78
8
66
33
9
14
41
1.79
15732--15772
21
1.9
22
95
5
75
36
12
17
34
1.87
15810--16089
22
12.6
22
68
14
112
35
16
10
37
1.83
15953--16088
71
1.9
71
82
5
168
38
15
7
38
1.75
16034--16159
22
5.8
21
71
15
78
41
16
7
34
1.78
16026--16143
44
2.7
44
78
10
109
39
20
6
33
1.79
16745--16786
16
2.6
16
100
0
84
52
0
11
35
1.38
17409--17490
22
3.7
22
77
3
67
36
15
12
35
1.85
17433--17809
22
17.7
21
71
15
224
36
15
8
39
1.78
17852--17999
66
2.2
66
81
2
163
35
11
8
43
1.72
17828--18064
22
10.7
22
74
7
142
35
11
9
43
1.74
17827--18098
22
12.5
22
69
16
124
34
13
9
43
1.76
18122--18244
22
5.6
22
75
8
99
40
19
4
34
1.73
18227--18270
22
2.0
23
82
13
56
29
13
9
47
1.74
18351--18417
22
3.0
22
80
0
89
35
16
11
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18331--18417
44
1.9
44
86
9
122
36
14
11
36
1.83
21641--21679
2
20.0
2
89
5
62
48
0
2
48
1.15
26677--26871
72
2.7
71
83
5
257
31
17
7
43
1.77
27095--27124
15
2.1
15
93
6
53
23
13
0
63
1.29
46060--46106
12
3.8
12
76
13
51
2
31
2
63
1.18
46578--46629
6
8.7
6
93
0
77
19
50
13
17
1.78
47279--47321
22
2.0
22
86
8
63
44
13
2
39
1.57
47386--47495
2
54.5
2
81
1
94
47
11
0
40
1.47
48986--49047
6
10.3
6
85
0
70
33
14
20
30
1.93
48987--49047
9
6.8
9
78
0
59
34
13
21
31
1.91
48987--49045
12
4.9
12
85
0
82
33
11
22
32
1.90
51070--51102
2
16.5
2
100
0
66
48
0
0
51
1.00
59693--59939
124
2.0
123
80
4
273
51
2
9
36
1.48
63356--63389
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!