Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020204.1 Corchorus olitorius cultivar O-4 contig20237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8231
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:54 original size:2 final size:2

Alignment explanation


    Indices: 1--34  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

                                                              
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         35 GGCCGCATTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:54 original size:29 final size:29

Alignment explanation


    Indices: 18--75  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

          8 ATATATATAT

                                         
         18 ATATATATATATATATAGGCCGCATTTGC
          1 ATATATATATATATATAGGCCGCATTTGC

                                         
         47 ATATATATATATATATAGGCCGCATTTGC
          1 ATATATATATATATATAGGCCGCATTTGC

         76 TATTGGGGCG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Consensus pattern (29 bp):   
ATATATATATATATATAGGCCGCATTTGC
Done.